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Rab4a Gene Detail
Summary
  • Symbol
    Rab4a
  • Name
    RAB4A, member RAS oncogene family
  • Synonyms
    Rab4
  • Feature Type
    protein coding gene
  • IDs
    MGI:105069
    NCBI Gene: 19341
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:124532748-124562030 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 72.19 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1109 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_105069
 protein coding gene Chr8:124532724-124562030 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034261
 protein coding gene Chr8:127440943-127469528 (+)
A/J MGP_AJ_G0034241
 protein coding gene Chr8:122186000-122216047 (+)
AKR/J MGP_AKRJ_G0034168
 protein coding gene Chr8:125696820-125726119 (+)
BALB/cJ MGP_BALBcJ_G0034234
 protein coding gene Chr8:122372962-122402379 (+)
C3H/HeJ MGP_C3HHeJ_G0033945
 protein coding gene Chr8:126335390-126364498 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034754
 protein coding gene Chr8:131717714-131747958 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031696
 protein coding gene Chr8:114965115-114993530 (+)
CAST/EiJ MGP_CASTEiJ_G0033273
 protein coding gene Chr8:126443808-126476259 (+)
CBA/J MGP_CBAJ_G0033918
 protein coding gene Chr8:136532701-136565488 (+)
DBA/2J MGP_DBA2J_G0034074
 protein coding gene Chr8:121337803-121369413 (+)
FVB/NJ MGP_FVBNJ_G0034018
 protein coding gene Chr8:120501971-120531444 (+)
LP/J MGP_LPJ_G0034164
 protein coding gene Chr8:127603390-127631952 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034065
 protein coding gene Chr8:138674041-138704048 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034773
 protein coding gene Chr8:125926853-125960449 (+)
PWK/PhJ MGP_PWKPhJ_G0032974
 protein coding gene Chr8:121094187-121124306 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032814
 protein coding gene Chr8:124573989-124604826 (+)
WSB/EiJ MGP_WSBEiJ_G0033389
 protein coding gene Chr8:126655587-126688089 (+)



Homology
more
  • Human Ortholog
    RAB4A, RAB4A, member RAS oncogene family
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB4A, RAB4A, member RAS oncogene family
  • Synonyms
    HRES-1, HRES1, HRES-1/RAB4, RAB4
  • Links
    NCBI Gene ID: 5867
    neXtProt AC: NX_P20338
    UniProt: P20338

  • Chr Location
    1q42.13; chr1:229271062-229305894 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    47
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    790
  • Tissues
    44
  • cDNA Data
    57
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 19341 NCBI Gene Model | MGI Sequence Detail 29283 C57BL/6J ±  kb
    transcript NM_009003 RefSeq | MGI Sequence Detail 1399 C57BL/6  
    polypeptide P56371 UniProt | EBI | MGI Sequence Detail 218 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 58
      cDNA 58

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-32108, MGI:2142629
    References
    more
    • Summaries
      All 55
      Developmental Gene Expression 8
      Gene Ontology 12
      Phenotypes 8
    • Earliest
      J:30578 Barbosa MD, et al., The Rab protein family: genetic mapping of six Rab genes in the mouse. Genomics. 1995 Dec 10;30(3):439-44
    • Latest
      J:346995 Huang N, et al., Rab4A-directed endosome traffic shapes pro-inflammatory mitochondrial metabolism in T cells via mitophagy, CD98 expression, and kynurenine-sensitive mTOR activation. Nat Commun. 2024 Mar 22;15(1):2598
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory