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Hmx1 Gene Detail
Summary
  • Symbol
    Hmx1
  • Name
    H6 homeobox 1
  • Synonyms
    Nkx5-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:107178
    NCBI Gene: 15371
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:35546452-35557074 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 18.14 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    357 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107178
 protein coding gene Chr5:35546124-35557629 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029478
 protein coding gene Chr5:33660583-33674324 (+)
A/J MGP_AJ_G0029445
 protein coding gene Chr5:32570765-32582260 (+)
AKR/J MGP_AKRJ_G0029394
 protein coding gene Chr5:33817474-33829075 (+)
BALB/cJ MGP_BALBcJ_G0029455
 protein coding gene Chr5:33091684-33102468 (+)
C3H/HeJ MGP_C3HHeJ_G0029177
 protein coding gene Chr5:33843122-33854651 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029909
 protein coding gene Chr5:35569232-35581340 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027146
 protein coding gene Chr5:30334092-30344912 (+)
CAST/EiJ MGP_CASTEiJ_G0028586
 protein coding gene Chr5:32929656-32941851 (+)
CBA/J MGP_CBAJ_G0029145
 protein coding gene Chr5:36399816-36414177 (+)
DBA/2J MGP_DBA2J_G0029293
 protein coding gene Chr5:32718048-32728801 (+)
FVB/NJ MGP_FVBNJ_G0029252
 protein coding gene Chr5:32173193-32184527 (+)
LP/J MGP_LPJ_G0029378
 protein coding gene Chr5:34093307-34103971 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029282
 protein coding gene Chr5:37225695-37237649 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029942
 protein coding gene Chr5:33325017-33337187 (+)
PWK/PhJ MGP_PWKPhJ_G0028311
 protein coding gene Chr5:31879866-31890513 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028142
 protein coding gene Chr5:32781508-32792162 (+)
WSB/EiJ MGP_WSBEiJ_G0028667
 protein coding gene Chr5:33383779-33395338 (+)



Homology
more
  • Human Ortholog
    HMX1, H6 family homeobox 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HMX1, H6 family homeobox 1
  • Synonyms
    H6, NKX5-3
  • Links
    NCBI Gene ID: 3166
    neXtProt AC: NX_Q9NP08
    UniProt: Q9NP08

  • Chr Location
    4p16.1; chr4:8846076-8871839 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Hmx1 mouse models; 1 with human HMX1 associations

Human Disease Mouse Models
      
IDs
 View 2 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotypes from 3 alleles in 3 genetic backgrounds
    7 images
    30 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a spontaneous mutation show perinatal lethality, reduced body mass and low set, laterally-protruding ears. In addition to these phenotypes, mice homozygous for an ENU mutation can display small eyes, mild cranial defects, and perinatal semilethality associated with exencephaly.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    900
  • Tissues
    128
  • cDNA Data
    4
  • Literature Summary
    22
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000067438 Ensembl Gene Model | MGI Sequence Detail 10623 C57BL/6J ±  kb
    transcript ENSMUST00000087674 Ensembl | MGI Sequence Detail 1526 Not Applicable  
    polypeptide ENSMUSP00000084958 Ensembl | MGI Sequence Detail 332 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 14
      Genomic 4
      cDNA 5
      Primer pair 3
      Other 2

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-35639
    References
    more
    • Summaries
      All 74
      Developmental Gene Expression 22
      Diseases 2
      Gene Ontology 6
      Phenotypes 30
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:357469 Sivori M, et al., The pelvic organs receive no parasympathetic innervation. Elife. 2024;15
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory