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Cdh9 Gene Detail
Summary
  • Symbol
    Cdh9
  • Name
    cadherin 9
  • Synonyms
    T1-cadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:107433
    NCBI Gene: 12565
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:16728842-16857180 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 7.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3773 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107433
 protein coding gene Chr15:16728641-16857224 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021742
 protein coding gene Chr15:14258984-14339867 (+)
A/J MGP_AJ_G0021702
 protein coding gene Chr15:13797504-13876679 (+)
AKR/J MGP_AKRJ_G0021680
 protein coding gene Chr15:14148191-14233291 (+)
BALB/cJ MGP_BALBcJ_G0021709
 protein coding gene Chr15:13754990-13840451 (+)
C3H/HeJ MGP_C3HHeJ_G0021485
 protein coding gene Chr15:14057003-14190831 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022148
 protein coding gene Chr15:14816368-14921078 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019689
 protein coding gene Chr15:12902702-13023666 (+)
CAST/EiJ MGP_CASTEiJ_G0021001
 protein coding gene Chr15:14328837-14468076 (+)
CBA/J MGP_CBAJ_G0021454
 protein coding gene Chr15:15314407-15422678 (+)
DBA/2J MGP_DBA2J_G0021578
 protein coding gene Chr15:13559907-13689289 (+)
FVB/NJ MGP_FVBNJ_G0021556
 protein coding gene Chr15:13364096-13445798 (+)
LP/J MGP_LPJ_G0021646
 protein coding gene Chr15:14216929-14299107 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021581
 protein coding gene Chr15:16334550-16509306 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022171
 protein coding gene Chr15:14199267-14275267 (+)
PWK/PhJ MGP_PWKPhJ_G0020744
 protein coding gene Chr15:13775230-13909637 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020582
 protein coding gene Chr15:14100066-14180886 (+)
WSB/EiJ MGP_WSBEiJ_G0021057
 protein coding gene Chr15:14094539-14232818 (+)



Homology
more
  • Human Ortholog
    CDH9, cadherin 9
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDH9, cadherin 9
  • Links
    NCBI Gene ID: 1007
    neXtProt AC: NX_Q9ULB4
    UniProt: Q9ULB4

  • Chr Location
    5p14.1; chr5:26880597-27121150 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 2 genetic backgrounds
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout results in the formation of abnormal axonal arbors in some retinal type 5 bipolar cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    35
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    939
  • Tissues
    168
  • cDNA Data
    9
  • Literature Summary
    16
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025370 Ensembl Gene Model | MGI Sequence Detail 128339 C57BL/6J ±  kb
    transcript ENSMUST00000026432 Ensembl | MGI Sequence Detail 2892 Not Applicable  
    polypeptide ENSMUSP00000026432 Ensembl | MGI Sequence Detail 788 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 9
      Primer pair 7

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-35904
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 16
      Gene Ontology 5
      Phenotypes 16
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory