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Sdf4 Gene Detail
Summary
  • Symbol
    Sdf4
  • Name
    stromal cell derived factor 4
  • Synonyms
    Cab45
  • Feature Type
    protein coding gene
  • IDs
    MGI:108079
    NCBI Gene: 20318
  • Alliance
    gene page
  • Transcription Start Sites
    19 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:156077329-156098067 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 87.66 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    890 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_108079
 protein coding gene Chr4:156077300-156098067 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029242
 protein coding gene Chr4:160358927-160383386 (+)
A/J MGP_AJ_G0029207
 protein coding gene Chr4:153603014-153623467 (+)
AKR/J MGP_AKRJ_G0029155
 protein coding gene Chr4:157781166-157804238 (+)
BALB/cJ MGP_BALBcJ_G0029223
 protein coding gene Chr4:154078860-154099274 (+)
C3H/HeJ MGP_C3HHeJ_G0028944
 protein coding gene Chr4:158344238-158367330 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029672
 protein coding gene Chr4:166044445-166064826 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026916
 protein coding gene Chr4:145880480-145901074 (+)
CAST/EiJ MGP_CASTEiJ_G0028356
 protein coding gene Chr4:155784241-155805237 (+)
CBA/J MGP_CBAJ_G0028906
 protein coding gene Chr4:171081370-171107368 (+)
DBA/2J MGP_DBA2J_G0029055
 protein coding gene Chr4:153624653-153644797 (+)
FVB/NJ MGP_FVBNJ_G0029018
 protein coding gene Chr4:152872032-152892774 (+)
LP/J MGP_LPJ_G0029145
 protein coding gene Chr4:160299904-160319739 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029045
 protein coding gene Chr4:173876898-173899039 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029704
 protein coding gene Chr4:158423631-158449104 (+)
PWK/PhJ MGP_PWKPhJ_G0028077
 protein coding gene Chr4:149763602-149784108 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027911
 protein coding gene Chr4:152676476-152696427 (+)
WSB/EiJ MGP_WSBEiJ_G0028436
 protein coding gene Chr4:158588136-158613307 (+)



Homology
more
  • Human Ortholog
    SDF4, stromal cell derived factor 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDF4, stromal cell derived factor 4
  • Synonyms
    Cab45, SDF-4
  • Links
    NCBI Gene ID: 51150
    neXtProt AC: NX_Q9BRK5
    UniProt: Q9BRK5

  • Chr Location
    1p36.33; chr1:1216931-1232031 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    45
  • cDNA Data
    262
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029076 Ensembl Gene Model | MGI Sequence Detail 20739 C57BL/6J ±  kb
transcript ENSMUST00000050078 Ensembl | MGI Sequence Detail 5177 Not Applicable  
polypeptide ENSMUSP00000053175 Ensembl | MGI Sequence Detail 361 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 263
    cDNA 262
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-35048, MGD-MRK-37116, MGI:106592
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:32511 Scherer PE, et al., Cab45, a novel (Ca2+)-binding protein localized to the Golgi lumen. J Cell Biol. 1996 Apr;133(2):257-68
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory