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Stbd1 Gene Detail
Summary
  • Symbol
    Stbd1
  • Name
    starch binding domain 1
  • Synonyms
    D530019K15Rik, D5Ertd593e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1261768
    NCBI Gene: 52331
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:92750910-92754438 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 47.21 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    177 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1261768
 protein coding gene Chr5:92750900-92754438 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029754
 protein coding gene Chr5:93794019-93799667 (+)
A/J MGP_AJ_G0029720
 protein coding gene Chr5:90064709-90068246 (+)
AKR/J MGP_AKRJ_G0029666
 protein coding gene Chr5:93032953-93038164 (+)
BALB/cJ MGP_BALBcJ_G0029730
 protein coding gene Chr5:90942094-90948406 (+)
C3H/HeJ MGP_C3HHeJ_G0029453
 protein coding gene Chr5:93414829-93419959 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030184
 protein coding gene Chr5:97507030-97510563 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027420
 protein coding gene Chr5:85698547-85702104 (+)
CAST/EiJ MGP_CASTEiJ_G0028863
 protein coding gene Chr5:92796757-92800267 (+)
CBA/J MGP_CBAJ_G0029423
 protein coding gene Chr5:100913864-100918527 (+)
DBA/2J MGP_DBA2J_G0029567
 protein coding gene Chr5:90110181-90114495 (+)
FVB/NJ MGP_FVBNJ_G0029526
 protein coding gene Chr5:88965780-88969585 (+)
LP/J MGP_LPJ_G0029655
 protein coding gene Chr5:94155501-94159090 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029555
 protein coding gene Chr5:105805758-105814079 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030218
 protein coding gene Chr5:92545133-92548681 (+)
PWK/PhJ MGP_PWKPhJ_G0028582
 protein coding gene Chr5:89171568-89175364 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028417
 protein coding gene Chr5:91889714-91893241 (+)
WSB/EiJ MGP_WSBEiJ_G0028942
 protein coding gene Chr5:93008201-93011740 (+)



Homology
more
  • Human Ortholog
    STBD1, starch binding domain 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    STBD1, starch binding domain 1
  • Synonyms
    GENEX3414, GENX-3414
  • Links
    NCBI Gene ID: 8987
    neXtProt AC: NX_O95210
    UniProt: O95210

  • Chr Location
    4q21.1; chr4:76306733-76311130 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    4 phenotypes from multigenic genotypes
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show normal fasting glycogen levels in heart, skeletal muscle, and liver tissues.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    786
  • Tissues
    29
  • cDNA Data
    13
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52331 NCBI Gene Model | MGI Sequence Detail 3529 C57BL/6J ±  kb
transcript NM_175096 RefSeq | MGI Sequence Detail 1985 ZRU/MplStud  
polypeptide Q8C7E7 UniProt | EBI | MGI Sequence Detail 338 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 13
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915506
References
more
  • Summaries
    All 49
    Developmental Gene Expression 3
    Gene Ontology 9
    Phenotypes 15
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory