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Clca3a1 Gene Detail
Summary
  • Symbol
    Clca3a1
  • Name
    chloride channel accessory 3A1
  • Synonyms
    Clca1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1316732
    NCBI Gene: 12722
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:144435438-144466738 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 69.06 cM, cytoband H2-H3
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    816 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316732
 protein coding gene Chr3:144435438-144466738 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0027910
 protein coding gene Chr3:142801777-142817334 (-)
AKR/J MGP_AKRJ_G0027876
 protein coding gene Chr3:146609608-146642335 (-)
BALB/cJ MGP_BALBcJ_G0027923
 protein coding gene Chr3:142690006-142732160 (-)
C3H/HeJ MGP_C3HHeJ_G0027652
 protein coding gene Chr3:147034435-147101788 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028367
 protein coding gene Chr3:153131797-153195786 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025704
 protein coding gene Chr3:137933601-137972261 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0027629
 protein coding gene Chr3:158377016-158453511 (-)
DBA/2J MGP_DBA2J_G0027768
 protein coding gene Chr3:141949676-141990650 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0027879
 protein coding gene Chr3:149522076-149549964 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0028425
 protein coding gene Chr3:146278253-146303017 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0027188
 protein coding gene Chr3:147175762-147215416 (-)



Homology
more
  • Human Ortholog
    CLCA3P, chloride channel accessory 3, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLCA3P, chloride channel accessory 3, pseudogene
  • Synonyms
    CLCA3
  • Links
    NCBI Gene ID: 9629
    UniProt: Q9Y6N3

  • Chr Location
    1p22.3; chr1:86634273-86655376 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1000
  • Tissues
    98
  • cDNA Data
    19
  • Literature Summary
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12722 NCBI Gene Model | MGI Sequence Detail 31301 C57BL/6J ±  kb
transcript NM_009899 RefSeq | MGI Sequence Detail 3899 ZRU/MplStud  
polypeptide Q9QX15 UniProt | EBI | MGI Sequence Detail 902 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • EC
    3.4.-.-
  • InterPro Domains
    IPR013642 Calcium-activated chloride channel, N-terminal
    IPR004727 Calcium-activated chloride channel protein, chordata
    IPR051266 Calcium-activated chloride channel regulator
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
  • GlyGen
    Q9QX15 8 sites, 3 N-linked glycans (3 sites)
Molecular
Reagents
less
  • All nucleic 29
    cDNA 20
    Primer pair 7
    Other 2

    Microarray probesets 4
References
more
  • Summaries
    All 41
    Developmental Gene Expression 8
    Diseases 1
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:5128 Stewart AD, et al., Studies on syndrome of diabetes insipidus associated with oligosyndactyly in mice. Am J Physiol. 1969 Oct;217(4):1191-8
  • Latest
    J:330505 Drake KA, et al., Transcription Factors YAP/TAZ and SRF Cooperate To Specify Renal Myofibroblasts in the Developing Mouse Kidney. J Am Soc Nephrol. 2022 Aug 2;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory