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Tfec Gene Detail
Summary
  • Symbol
    Tfec
  • Name
    transcription factor EC
  • Synonyms
    bHLHe34, Tcfec, TFEC
  • Feature Type
    protein coding gene
  • IDs
    MGI:1333760
    NCBI Gene: 21426
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:16833372-16898440 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 7.61 cM, cytoband E4-G
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1703 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1333760
 protein coding gene Chr6:16830926-16898463 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030466
 protein coding gene Chr6:14036254-14105025 (-)
A/J MGP_AJ_G0030439
 protein coding gene Chr6:13483905-13551383 (-)
AKR/J MGP_AKRJ_G0030366
 protein coding gene Chr6:13966374-14031851 (-)
BALB/cJ MGP_BALBcJ_G0030448
 protein coding gene Chr6:13570971-13635497 (-)
C3H/HeJ MGP_C3HHeJ_G0030162
 protein coding gene Chr6:13815474-13883250 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030903
 protein coding gene Chr6:14497154-14565693 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028114
 protein coding gene Chr6:12476319-12541242 (-)
CAST/EiJ MGP_CASTEiJ_G0029564
 protein coding gene Chr6:13721427-13790327 (-)
CBA/J MGP_CBAJ_G0030140
 protein coding gene Chr6:14951312-15025181 (-)
DBA/2J MGP_DBA2J_G0030284
 protein coding gene Chr6:13414940-13481478 (-)
FVB/NJ MGP_FVBNJ_G0030238
 protein coding gene Chr6:13257527-13322396 (-)
LP/J MGP_LPJ_G0030371
 protein coding gene Chr6:14137323-14206161 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030274
 protein coding gene Chr6:16147297-16229128 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030933
 protein coding gene Chr6:13835805-13904583 (-)
PWK/PhJ MGP_PWKPhJ_G0029278
 protein coding gene Chr6:13062949-13128523 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029114
 protein coding gene Chr6:13679363-13747585 (-)
WSB/EiJ MGP_WSBEiJ_G0029640
 protein coding gene Chr6:13759139-13831043 (-)



Homology
more
  • Human Ortholog
    TFEC, transcription factor EC
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TFEC, transcription factor EC
  • Synonyms
    bHLHe34, hTFEC-L, TCFEC, TFE-C, TFEC-L, TFECL
  • Links
    NCBI Gene ID: 22797
    neXtProt AC: NX_O14948
    UniProt: O14948

  • Chr Location
    7q31.2; chr7:115935148-116159896 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    6 phenotypes from multigenic genotypes
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele are viable and fertile, normally pigmented, have normal eyes and mast cells, and show no evidence of osteopetrosis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    901
  • Tissues
    154
  • cDNA Data
    23
  • Literature Summary
    12
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000029553 Ensembl Gene Model | MGI Sequence Detail 65069 C57BL/6J ±  kb
    transcript ENSMUST00000031533 Ensembl | MGI Sequence Detail 1787 Not Applicable  
    polypeptide ENSMUSP00000031533 Ensembl | MGI Sequence Detail 317 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 28
      Genomic 1
      cDNA 25
      Primer pair 2

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:2141727
    References
    more
    • Summaries
      All 51
      Developmental Gene Expression 12
      Gene Ontology 6
      Phenotypes 11
    • Earliest
      J:53285 Zhao GQ, et al., TFEC, a basic helix-loop-helix protein, forms heterodimers with TFE3 and inhibits TFE3-dependent transcription activation. Mol Cell Biol. 1993 Aug;13(8):4505-12
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory