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Cst9 Gene Detail
Summary
  • Symbol
    Cst9
  • Name
    cystatin 9
  • Synonyms
    cresp, M12, testatin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1340053
    NCBI Gene: 13013
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:148677067-148680657 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 73.58 cM, cytoband H1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    277 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1340053
 protein coding gene Chr2:148677067-148680658 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026618
 protein coding gene Chr2:153192849-153196440 (+)
A/J MGP_AJ_G0026582
 protein coding gene Chr2:146952130-146957510 (+)
AKR/J MGP_AKRJ_G0026556
 protein coding gene Chr2:151200640-151204231 (+)
BALB/cJ MGP_BALBcJ_G0026594
 protein coding gene Chr2:147386076-147390117 (+)
C3H/HeJ MGP_C3HHeJ_G0026337
 protein coding gene Chr2:151692562-151697485 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027039
 protein coding gene Chr2:157657890-157661481 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024417
 protein coding gene Chr2:140953745-140957314 (+)
CAST/EiJ MGP_CASTEiJ_G0025798
 protein coding gene Chr2:152100173-152103763 (+)
CBA/J MGP_CBAJ_G0026317
 protein coding gene Chr2:163427579-163431537 (+)
DBA/2J MGP_DBA2J_G0026451
 protein coding gene Chr2:146222051-146226138 (+)
FVB/NJ MGP_FVBNJ_G0026415
 protein coding gene Chr2:144718280-144722084 (+)
LP/J MGP_LPJ_G0026555
 protein coding gene Chr2:153324284-153327875 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026435
 protein coding gene Chr2:167466980-167470564 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027094
 protein coding gene Chr2:151205256-151209835 (+)
PWK/PhJ MGP_PWKPhJ_G0025534
 protein coding gene Chr2:145900027-145903611 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025335
 protein coding gene Chr2:150171374-150174959 (+)
WSB/EiJ MGP_WSBEiJ_G0025872
 protein coding gene Chr2:152154206-152157794 (+)



Homology
more
  • Human Ortholog
    CST9, cystatin 9
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CST9, cystatin 9
  • Synonyms
    CLM, CTES7A
  • Links
    NCBI Gene ID: 128822
    neXtProt AC: NX_Q5W186
    UniProt: Q5W186

  • Chr Location
    20p11.21; chr20:23602410-23605917 (-)  GRCh38
  • Human Ortholog
    CST9L, cystatin 9 like
  • Synonyms
    bA218C14.1, CTES7B
  • Links
    NCBI Gene ID: 128821
    neXtProt AC: NX_Q9H4G1
    UniProt: Q9H4G1

  • Chr Location
    20p11.21; chr20:23564732-23568484 (-)  GRCh38
  • Human Ortholog
    CST9LP1, cystatin 9-like pseudogene 1
  • Synonyms
    CTES7C
  • Links
    NCBI Gene ID: 128820
    UniProt: Q5W188

  • Chr Location
    20p11.21; chr20:23547764-23550652 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 3 alleles in 3 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes are viable and fertile with normal testes development and morphology, sperm numbers and motility, and serum levels of testosterone, luteinizing hormone, and follicle-stimulating hormone.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    927
  • Tissues
    73
  • cDNA Data
    13
  • Literature Summary
    18
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 13013 NCBI Gene Model | MGI Sequence Detail 3591 C57BL/6J ±  kb
    transcript NM_009979 RefSeq | MGI Sequence Detail 687 Not Specified  
    polypeptide Q9Z0H6 UniProt | EBI | MGI Sequence Detail 137 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 24
      cDNA 13
      Primer pair 9
      Other 2

      Microarray probesets 4
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 18
      Gene Ontology 5
      Phenotypes 15
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory