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Srrm1 Gene Detail
Summary
  • Symbol
    Srrm1
  • Name
    serine/arginine repetitive matrix 1
  • Synonyms
    SRm160
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858303
    NCBI Gene: 51796
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:135047795-135080632 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 67.34 cM, cytoband D3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    896 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1858303
 protein coding gene Chr4:135047795-135080787 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028941
 protein coding gene Chr4:137751286-137785119 (-)
A/J MGP_AJ_G0028900
 protein coding gene Chr4:131934703-131968661 (-)
AKR/J MGP_AKRJ_G0028852
 protein coding gene Chr4:135733992-135766645 (-)
BALB/cJ MGP_BALBcJ_G0028924
 protein coding gene Chr4:132588768-132622431 (-)
C3H/HeJ MGP_C3HHeJ_G0028638
 protein coding gene Chr4:135990675-136030321 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029365
 protein coding gene Chr4:142682824-142717363 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026636
 protein coding gene Chr4:124992392-125024878 (-)
CAST/EiJ MGP_CASTEiJ_G0028070
 protein coding gene Chr4:134121707-134156477 (-)
CBA/J MGP_CBAJ_G0028603
 protein coding gene Chr4:146559056-146604149 (-)
DBA/2J MGP_DBA2J_G0028752
 protein coding gene Chr4:132355004-132388282 (-)
FVB/NJ MGP_FVBNJ_G0028719
 protein coding gene Chr4:131267502-131305742 (-)
LP/J MGP_LPJ_G0028851
 protein coding gene Chr4:137856247-137891482 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028745
 protein coding gene Chr4:150889806-150926424 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029403
 protein coding gene Chr4:136175322-136209956 (-)
PWK/PhJ MGP_PWKPhJ_G0027790
 protein coding gene Chr4:129123493-129156948 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027616
 protein coding gene Chr4:132010443-132045489 (-)
WSB/EiJ MGP_WSBEiJ_G0028148
 protein coding gene Chr4:136358227-136391440 (-)



Homology
more
  • Human Ortholog
    SRRM1, serine and arginine repetitive matrix 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SRRM1, serine and arginine repetitive matrix 1
  • Synonyms
    160-KD, POP101, SRM160
  • Links
    NCBI Gene ID: 10250
    neXtProt AC: NX_Q8IYB3
    UniProt: Q8IYB3

  • Chr Location
    1p36.11; chr1:24631716-24673281 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    784
  • Tissues
    71
  • cDNA Data
    243
  • Literature Summary
    6
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028809 Ensembl Gene Model | MGI Sequence Detail 32838 C57BL/6J ±  kb
transcript ENSMUST00000136342 Ensembl | MGI Sequence Detail 3152 Not Applicable  
polypeptide ENSMUSP00000125003 Ensembl | MGI Sequence Detail 923 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 245
    cDNA 244
    Primer pair 1

    Microarray probesets 9
Other
Accession IDs
less
MGI:2140123
References
more
  • Summaries
    All 44
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 12
  • Earliest
    J:70954 Blencowe BJ, et al., A coactivator of pre-mRNA splicing. Genes Dev. 1998 Apr 1;12(7):996-1009
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory