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Copg2 Gene Detail
Summary
  • Symbol
    Copg2
  • Name
    coatomer protein complex, subunit gamma 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858683
    NCBI Gene: 54160
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:30747552-30873712 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 12.54 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1675 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1858683
 protein coding gene Chr6:30747552-30873729 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030545
 protein coding gene Chr6:28651818-28794686 (-)
A/J MGP_AJ_G0030518
 protein coding gene Chr6:27423004-27584053 (-)
AKR/J MGP_AKRJ_G0030445
 protein coding gene Chr6:28335602-28510422 (-)
BALB/cJ MGP_BALBcJ_G0030528
 protein coding gene Chr6:27568422-27702345 (-)
C3H/HeJ MGP_C3HHeJ_G0030241
 protein coding gene Chr6:28327755-28510388 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030982
 protein coding gene Chr6:29476971-29619167 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028193
 protein coding gene Chr6:25611714-25744286 (-)
CAST/EiJ MGP_CASTEiJ_G0029643
 protein coding gene Chr6:28149696-28293601 (-)
CBA/J MGP_CBAJ_G0030219
 protein coding gene Chr6:30587825-30787698 (-)
DBA/2J MGP_DBA2J_G0030363
 protein coding gene Chr6:27353880-27484876 (-)
FVB/NJ MGP_FVBNJ_G0030317
 protein coding gene Chr6:27117490-27279024 (-)
LP/J MGP_LPJ_G0030450
 protein coding gene Chr6:28785941-28983986 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030353
 protein coding gene Chr6:33016719-33183786 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031012
 protein coding gene Chr6:28209236-28393299 (-)
PWK/PhJ MGP_PWKPhJ_G0029357
 protein coding gene Chr6:26927416-27065411 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029193
 protein coding gene Chr6:27960543-28091013 (-)
WSB/EiJ MGP_WSBEiJ_G0029719
 protein coding gene Chr6:28180073-28323259 (-)



Homology
more
  • Human Ortholog
    COPG2, COPI coat complex subunit gamma 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COPG2, COPI coat complex subunit gamma 2
  • Synonyms
    2-COP, gamma-2-COP
  • Links
    NCBI Gene ID: 26958
    neXtProt AC: NX_Q9UBF2
    UniProt: Q9UBF2

  • Chr Location
    7q32.2; chr7:130506238-130668748 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    716
  • Tissues
    8
  • cDNA Data
    12
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 54160 NCBI Gene Model | MGI Sequence Detail 126161 C57BL/6J ±  kb
transcript NR_149738 RefSeq | MGI Sequence Detail 4183 C57BL/6  
polypeptide Q9QXK3 UniProt | EBI | MGI Sequence Detail 871 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000005738 coatomer subunit gamma-2
    (term hierarchy)
  • InterPro Domains
    IPR011989 Armadillo-like helical
    IPR016024 Armadillo-type fold
    IPR013041 Clathrin adaptor, appendage, Ig-like subdomain superfamily
    IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
    IPR009028 Coatomer/calthrin adaptor appendage, C-terminal subdomain
    IPR017106 Coatomer gamma subunit
    IPR037067 Coatomer, gamma subunit, appendage domain superfamily
    IPR013040 Coatomer, gamma subunit, appendage, Ig-like subdomain
    IPR032154 Coatomer subunit gamma, C-terminal
    IPR012295 TBP domain superfamily
  • GlyGen
    Q9QXK3 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 16
    cDNA 14
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141671
References
more
  • Summaries
    All 38
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 7
  • Earliest
    J:61896 Lee YJ, et al., Mit1/Lb9 and Copg2, new members of mouse imprinted genes closely linked to Peg1/Mest(1). FEBS Lett. 2000 Apr 28;472(2-3):230-4
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory