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Btbd9 Gene Detail
Summary
  • Symbol
    Btbd9
  • Name
    BTB domain containing 9
  • Synonyms
    1700023F20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916625
    NCBI Gene: 224671
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:30434498-30795462 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 15.62 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    7860 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916625
 protein coding gene Chr17:30434498-30801595 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023475
 protein coding gene Chr17:29811852-30208864 (-)
A/J MGP_AJ_G0023433
 protein coding gene Chr17:28806483-29193859 (-)
AKR/J MGP_AKRJ_G0023398
 protein coding gene Chr17:29040993-29434312 (-)
BALB/cJ MGP_BALBcJ_G0023438
 protein coding gene Chr17:29027026-29395632 (-)
C3H/HeJ MGP_C3HHeJ_G0023199
 protein coding gene Chr17:29421603-29838005 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023880
 protein coding gene Chr17:30947879-31327855 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021354
 protein coding gene Chr17:26091752-26444960 (-)
CAST/EiJ MGP_CASTEiJ_G0022700
 protein coding gene Chr17:29416827-29804887 (-)
CBA/J MGP_CBAJ_G0023174
 protein coding gene Chr17:32149691-32601048 (-)
DBA/2J MGP_DBA2J_G0023304
 protein coding gene Chr17:28283840-28664631 (-)
FVB/NJ MGP_FVBNJ_G0023274
 protein coding gene Chr17:28130243-28495017 (-)
LP/J MGP_LPJ_G0023382
 protein coding gene Chr17:30054270-30450301 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023292
 protein coding gene Chr17:31422352-31798211 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023922
 protein coding gene Chr17:29508082-29878768 (-)
PWK/PhJ MGP_PWKPhJ_G0022450
 protein coding gene Chr17:27153098-27523438 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022268
 protein coding gene Chr17:27521382-27859052 (-)
WSB/EiJ MGP_WSBEiJ_G0022762
 protein coding gene Chr17:29477387-29849426 (-)



Homology
more
  • Human Ortholog
    BTBD9, BTB domain containing 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BTBD9, BTB domain containing 9
  • Synonyms
    dJ322I12.1
  • Links
    NCBI Gene ID: 114781
    neXtProt AC: NX_Q96Q07
    UniProt: Q96Q07

  • Chr Location
    6p21.2; chr6:38168451-38640148 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Btbd9 mouse models

Human Disease Mouse Models
      
IDs
 View 4 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    28 phenotypes from 4 alleles in 5 genetic backgrounds
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trapped allele show hyperactivity, unidirectional circling, sleep disturbances, thermal sensory alterations, increased serum iron levels, altered serotonin metabolism, enhanced long-term potentiation and paired-pulse ratios, and enhanced cued and contextual fear memory.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    761
  • Tissues
    39
  • cDNA Data
    105
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000062202 Ensembl Gene Model | MGI Sequence Detail 360965 C57BL/6J ±  kb
    transcript ENSMUST00000237048 Ensembl | MGI Sequence Detail 1944 Not Applicable  
    polypeptide ENSMUSP00000157449 Ensembl | MGI Sequence Detail 612 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 109
      cDNA 107
      Primer pair 2

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2146876
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 6
      Diseases 3
      Gene Ontology 3
      Phenotypes 18
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory