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Stra6l Gene Detail
Summary
  • Symbol
    Stra6l
  • Name
    STRA6-like
  • Synonyms
    1300002K09Rik, Rbpr2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921402
    NCBI Gene: 74152
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:45848664-45887008 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 24.39 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1461 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921402
 protein coding gene Chr4:45818940-45887010 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028248
 protein coding gene Chr4:44107032-44152671 (+)
A/J MGP_AJ_G0028207
 protein coding gene Chr4:42522495-42560588 (+)
AKR/J MGP_AKRJ_G0028157
 protein coding gene Chr4:43538079-43579531 (+)
BALB/cJ MGP_BALBcJ_G0028227
 protein coding gene Chr4:42606533-42645246 (+)
C3H/HeJ MGP_C3HHeJ_G0027948
 protein coding gene Chr4:44146447-44191367 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028668
 protein coding gene Chr4:45747665-45795797 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025977
 protein coding gene Chr4:39908104-39947222 (+)
CAST/EiJ MGP_CASTEiJ_G0027387
 protein coding gene Chr4:43701816-43744057 (+)
CBA/J MGP_CBAJ_G0027914
 protein coding gene Chr4:47180749-47230535 (+)
DBA/2J MGP_DBA2J_G0028064
 protein coding gene Chr4:42414635-42453705 (+)
FVB/NJ MGP_FVBNJ_G0028031
 protein coding gene Chr4:41655023-41693972 (+)
LP/J MGP_LPJ_G0028163
 protein coding gene Chr4:44168016-44208381 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028055
 protein coding gene Chr4:50309567-50353340 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028703
 protein coding gene Chr4:43761662-43804890 (+)
PWK/PhJ MGP_PWKPhJ_G0027112
 protein coding gene Chr4:42496946-42535947 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026940
 protein coding gene Chr4:43256364-43297665 (+)
WSB/EiJ MGP_WSBEiJ_G0027465
 protein coding gene Chr4:43657621-43699975 (+)



Homology
more
  • Human Ortholog
    STRA6LP, STRA6 like, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    STRA6LP, STRA6 like, pseudogene
  • Links
    NCBI Gene ID: 112272565

  • Chr Location
    9q22.33; chr9:97290853-97294111 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    13
  • cDNA Data
    17
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000028327 Ensembl Gene Model | MGI Sequence Detail 38345 C57BL/6J ±  kb
    transcript ENSMUST00000107783 Ensembl | MGI Sequence Detail 3669 Not Applicable  
    polypeptide ENSMUSP00000103412 Ensembl | MGI Sequence Detail 621 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR026612 Receptor for retinol uptake STRA6-like
    • GlyGen
      Q9DBN1 2 sites, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 17
      cDNA 17

      Microarray probesets 3
    References
    more
    • Summaries
      All 31
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 10
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory