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Senp6 Gene Detail
Summary
  • Symbol
    Senp6
  • Name
    SUMO/sentrin specific peptidase 6
  • Synonyms
    2810017C20Rik, E130319N12Rik, mKIAA0797
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922075
    NCBI Gene: 215351
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:79974185-80052235 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 43.88 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1730 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922075
 protein coding gene Chr9:79973862-80052235 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035078
 protein coding gene Chr9:80631579-80712734 (+)
A/J MGP_AJ_G0035059
 protein coding gene Chr9:77856410-77940005 (+)
AKR/J MGP_AKRJ_G0034987
 protein coding gene Chr9:79678117-79758794 (+)
BALB/cJ MGP_BALBcJ_G0035047
 protein coding gene Chr9:77487638-77567419 (+)
C3H/HeJ MGP_C3HHeJ_G0034759
 protein coding gene Chr9:80200958-80283661 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035570
 protein coding gene Chr9:82811083-82895408 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032477
 protein coding gene Chr9:76999281-77082712 (+)
CAST/EiJ MGP_CASTEiJ_G0034077
 protein coding gene Chr9:80547824-80631339 (+)
CBA/J MGP_CBAJ_G0034732
 protein coding gene Chr9:85767391-85855380 (+)
DBA/2J MGP_DBA2J_G0034890
 protein coding gene Chr9:77468226-77551296 (+)
FVB/NJ MGP_FVBNJ_G0034833
 protein coding gene Chr9:76683091-76763555 (+)
LP/J MGP_LPJ_G0034971
 protein coding gene Chr9:80869291-80952986 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034875
 protein coding gene Chr9:86989073-87076929 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035591
 protein coding gene Chr9:79907657-79994474 (+)
PWK/PhJ MGP_PWKPhJ_G0033781
 protein coding gene Chr9:77674409-77753343 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033617
 protein coding gene Chr9:80046456-80129150 (+)
WSB/EiJ MGP_WSBEiJ_G0034194
 protein coding gene Chr9:79836198-79922823 (+)



Homology
more
  • Human Ortholog
    SENP6, SUMO specific peptidase 6
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SENP6, SUMO specific peptidase 6
  • Synonyms
    SSP1, SUSP1
  • Links
    NCBI Gene ID: 26054
    neXtProt AC: NX_Q9GZR1
    UniProt: Q9GZR1

  • Chr Location
    6q14.1; chr6:75601509-75718281 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trap insertion exhibit prenatal lethality.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    164
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034252 Ensembl Gene Model | MGI Sequence Detail 78051 C57BL/6J ±  kb
transcript ENSMUST00000165607 Ensembl | MGI Sequence Detail 3495 Not Applicable  
polypeptide ENSMUSP00000126777 Ensembl | MGI Sequence Detail 1139 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 164
    cDNA 164

    Microarray probesets 6
Other
Accession IDs
less
MGI:2442129
References
more
  • Summaries
    All 48
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 19
  • Earliest
    J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory