5730596B20Rik MGI Mouse Gene Detail - MGI:1924830

Sequence Map

Chr6:52154135-52157831 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924830	lncRNA gene	Chr6:52154135-52157831 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030742	protein coding gene	Chr6:51414954-51418306 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0030638	protein coding gene	Chr6:50720035-50723387 (+)
BALB/cJ	MGP_BALBcJ_G0030723	protein coding gene	Chr6:49372326-49375686 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0031178	protein coding gene	Chr6:52551764-52555120 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028385	protein coding gene	Chr6:46661072-46664433 (+)
CAST/EiJ	MGP_CASTEiJ_G0029839	protein coding gene	Chr6:50540857-50544206 (+)
CBA/J	MGP_CBAJ_G0030410	protein coding gene	Chr6:54751984-54755338 (+)
DBA/2J	MGP_DBA2J_G0030560	protein coding gene	Chr6:48935869-48939221 (+)
FVB/NJ	MGP_FVBNJ_G0030512	protein coding gene	Chr6:48545763-48549115 (+)
LP/J	MGP_LPJ_G0030645	protein coding gene	Chr6:51397528-51400880 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030546	protein coding gene	Chr6:57382759-57386110 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031208	protein coding gene	Chr6:50646710-50650064 (+)
PWK/PhJ	MGP_PWKPhJ_G0029552	protein coding gene	Chr6:48558452-48561854 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0029916	protein coding gene	Chr6:50662021-50665377 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	77580	NCBI Gene Model \| MGI Sequence Detail	3697	C57BL/6J	± kb
transcript	NR_163848	RefSeq \| MGI Sequence Detail	3697	C57BL/6
polypeptide	Q8BQ08	UniProt \| EBI \| MGI Sequence Detail	205	Not Applicable

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Summaries

All 22

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018

TSS for 5730596B20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56508	Chr6:52154132-52154136 (+)	-1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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