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Copz1 Gene Detail
Summary
  • Symbol
    Copz1
  • Name
    coatomer protein complex, subunit zeta 1
  • Synonyms
    5930435A22Rik, D4Ertd360e, nonclathrin coat protein zeta1-COP
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929063
    NCBI Gene: 56447
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:103181261-103208295 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 58.74 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    565 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929063
 protein coding gene Chr15:103181141-103208295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022437
 protein coding gene Chr15:105528966-105566574 (+)
A/J MGP_AJ_G0022399
 protein coding gene Chr15:101356575-101383839 (+)
AKR/J MGP_AKRJ_G0022374
 protein coding gene Chr15:104430341-104464166 (+)
BALB/cJ MGP_BALBcJ_G0022403
 protein coding gene Chr15:101402604-101428888 (+)
C3H/HeJ MGP_C3HHeJ_G0022170
 protein coding gene Chr15:104528114-104556396 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022852
 protein coding gene Chr15:109417626-109449577 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020375
 protein coding gene Chr15:97119842-97146119 (+)
CAST/EiJ MGP_CASTEiJ_G0021696
 protein coding gene Chr15:105396188-105426502 (+)
CBA/J MGP_CBAJ_G0022139
 protein coding gene Chr15:113268789-113299064 (+)
DBA/2J MGP_DBA2J_G0022270
 protein coding gene Chr15:100633311-100659846 (+)
FVB/NJ MGP_FVBNJ_G0022246
 protein coding gene Chr15:99693093-99719530 (+)
LP/J MGP_LPJ_G0022339
 protein coding gene Chr15:105674202-105700451 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022268
 protein coding gene Chr15:116768142-116801186 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022864
 protein coding gene Chr15:104473302-104499342 (+)
PWK/PhJ MGP_PWKPhJ_G0021436
 protein coding gene Chr15:100811378-100839406 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021268
 protein coding gene Chr15:104306604-104335574 (+)
WSB/EiJ MGP_WSBEiJ_G0021746
 protein coding gene Chr15:105090347-105120578 (+)



Homology
more
  • Human Ortholog
    COPZ1, COPI coat complex subunit zeta 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COPZ1, COPI coat complex subunit zeta 1
  • Synonyms
    CGI-120, COPZ, HSPC181, zeta1-COP, zeta-COP
  • Links
    NCBI Gene ID: 22818
    neXtProt AC: NX_P61923
    UniProt: P61923

  • Chr Location
    12q13.13; chr12:54301202-54351846 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    6
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    273
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56447 NCBI Gene Model | MGI Sequence Detail 27035 C57BL/6J ±  kb
transcript NM_001357748 RefSeq | MGI Sequence Detail 1924 ZRU/MplStud  
polypeptide P61924 UniProt | EBI | MGI Sequence Detail 177 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 275
    Genomic 1
    cDNA 273
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1196438, MGI:1915335, MGI:2145892
References
more
  • Summaries
    All 37
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory