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Thrap3 Gene Detail
Summary
  • Symbol
    Thrap3
  • Name
    thyroid hormone receptor associated protein 3
  • Synonyms
    9330151F09Rik, B230333E16Rik, Trap150
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442637
    NCBI Gene: 230753
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:126057875-126096548 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 60.00 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    820 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442637
 protein coding gene Chr4:126057875-126096553 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028774
 protein coding gene Chr4:127819343-127861306 (-)
A/J MGP_AJ_G0028733
 protein coding gene Chr4:122788295-122830685 (-)
AKR/J MGP_AKRJ_G0028686
 protein coding gene Chr4:126170426-126214225 (-)
BALB/cJ MGP_BALBcJ_G0028756
 protein coding gene Chr4:123370947-123410199 (-)
C3H/HeJ MGP_C3HHeJ_G0028470
 protein coding gene Chr4:126219972-126266930 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029198
 protein coding gene Chr4:132702739-132744641 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026471
 protein coding gene Chr4:115943565-115982740 (-)
CAST/EiJ MGP_CASTEiJ_G0027903
 protein coding gene Chr4:124336799-124374979 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0028585
 protein coding gene Chr4:123249026-123288732 (-)
FVB/NJ MGP_FVBNJ_G0028552
 protein coding gene Chr4:121902027-121940627 (-)
LP/J MGP_LPJ_G0028686
 protein coding gene Chr4:128106806-128152183 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028578
 protein coding gene Chr4:140945828-140986144 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029236
 protein coding gene Chr4:126514835-126559573 (-)
PWK/PhJ MGP_PWKPhJ_G0027624
 protein coding gene Chr4:119718350-119756389 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027450
 protein coding gene Chr4:122338229-122379528 (-)
WSB/EiJ MGP_WSBEiJ_G0027983
 protein coding gene Chr4:126613920-126659972 (-)



Homology
more
  • Human Ortholog
    THRAP3, thyroid hormone receptor associated protein 3
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THRAP3, thyroid hormone receptor associated protein 3
  • Synonyms
    BCLAF2, TRAP150
  • Links
    NCBI Gene ID: 9967
    neXtProt AC: NX_Q9Y2W1
    UniProt: Q9Y2W1

  • Chr Location
    1p34.3; chr1:36207637-36305357 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotypes from 1 allele in 1 genetic background
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    40
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    33
  • cDNA Data
    19
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 230753 NCBI Gene Model | MGI Sequence Detail 38674 C57BL/6J ±  kb
    transcript NM_001356455 RefSeq | MGI Sequence Detail 4438 C57BL/6  
    polypeptide Q569Z6 UniProt | EBI | MGI Sequence Detail 951 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 20
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2443173
    References
    more
    • Summaries
      All 59
      Developmental Gene Expression 8
      Gene Ontology 9
      Phenotypes 18
    • Earliest
      J:77765 Ito M, et al., The TRAP100 component of the TRAP/Mediator complex is essential in broad transcriptional events and development. EMBO J. 2002 Jul 1;21(13):3464-75
    • Latest
      J:339701 Zhang R, et al., LncRNA RP4-639F20.1 interacts with THRAP3 to attenuate atherosclerosis by regulating c-FOS in vascular smooth muscle cells proliferation and migration. Atherosclerosis. 2023 Jul 8;379:117183
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory