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A230009B12Rik Gene Detail
Summary
  • Symbol
    A230009B12Rik
  • Name
    RIKEN cDNA A230009B12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2442666
    NCBI Gene: 319750
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:10675145-10711986 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 7.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    812 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442666
 lncRNA gene Chr17:10675145-10711986 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003368
 antisense lncRNA gene Chr17:8056801-8093671 (+)
A/J MGP_AJ_G0003344
 antisense lncRNA gene Chr17:7952512-7990170 (+)
AKR/J MGP_AKRJ_G0003327
 antisense lncRNA gene Chr17:7693531-7731661 (+)
BALB/cJ MGP_BALBcJ_G0003333
 antisense lncRNA gene Chr17:7740574-7777812 (+)
C3H/HeJ MGP_C3HHeJ_G0003286
 antisense lncRNA gene Chr17:7987775-8028744 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003474
 antisense lncRNA gene Chr17:8363440-8402277 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002994
 antisense lncRNA gene Chr17:6425238-6462513 (-)
CAST/EiJ MGP_CASTEiJ_G0003249
 antisense lncRNA gene Chr17:8009434-8050396 (+)
CBA/J MGP_CBAJ_G0003282
 antisense lncRNA gene Chr17:8687909-8730937 (+)
DBA/2J MGP_DBA2J_G0003288
 antisense lncRNA gene Chr17:7593895-7630925 (+)
FVB/NJ MGP_FVBNJ_G0003306
 antisense lncRNA gene Chr17:7549046-7587315 (+)
LP/J MGP_LPJ_G0003361
 antisense lncRNA gene Chr17:7838957-7878727 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003295
 antisense lncRNA gene Chr17:8354549-8393667 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003477
 antisense lncRNA gene Chr17:8004716-8042173 (+)
PWK/PhJ MGP_PWKPhJ_G0003209
 antisense lncRNA gene Chr17:7285736-7323699 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003153
 antisense lncRNA gene Chr17:7348171-7390733 (+)
WSB/EiJ MGP_WSBEiJ_G0003283
 antisense lncRNA gene Chr17:8304960-8344414 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 319750 NCBI Gene Model | MGI Sequence Detail 36842 C57BL/6J ±  kb
transcript NR_077237 RefSeq | MGI Sequence Detail 1892 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 10
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory