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Gtdc1 Gene Detail
Summary
  • Symbol
    Gtdc1
  • Name
    glycosyltransferase-like domain containing 1
  • Synonyms
    E330008O22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444269
    NCBI Gene: 227835
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:44454424-44817669 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 27.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    6653 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444269
 protein coding gene Chr2:44454420-44817761 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025717
 protein coding gene Chr2:43601346-43997336 (-)
A/J MGP_AJ_G0025693
 protein coding gene Chr2:41841257-42205083 (-)
AKR/J MGP_AKRJ_G0025663
 protein coding gene Chr2:43125293-43497518 (-)
BALB/cJ MGP_BALBcJ_G0025688
 protein coding gene Chr2:41897901-42267783 (-)
C3H/HeJ MGP_C3HHeJ_G0025449
 protein coding gene Chr2:43070351-43437368 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026134
 protein coding gene Chr2:44905701-45306793 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023540
 protein coding gene Chr2:40154394-40522928 (-)
CAST/EiJ MGP_CASTEiJ_G0024914
 protein coding gene Chr2:43099156-43488795 (-)
CBA/J MGP_CBAJ_G0025429
 protein coding gene Chr2:46639223-47034762 (-)
DBA/2J MGP_DBA2J_G0025560
 protein coding gene Chr2:41503636-41876386 (-)
FVB/NJ MGP_FVBNJ_G0025522
 protein coding gene Chr2:41321161-41679925 (-)
LP/J MGP_LPJ_G0025648
 protein coding gene Chr2:43401911-43791007 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025553
 protein coding gene Chr2:46965339-47455544 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026192
 protein coding gene Chr2:43053054-43427439 (-)
PWK/PhJ MGP_PWKPhJ_G0024655
 protein coding gene Chr2:41444731-41804752 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024460
 protein coding gene Chr2:43129031-43509751 (-)
WSB/EiJ MGP_WSBEiJ_G0024981
 protein coding gene Chr2:43247863-43622178 (-)



Homology
more
  • Human Ortholog
    GTDC1, glycosyltransferase like domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GTDC1, glycosyltransferase like domain containing 1
  • Synonyms
    Hmat-Xa, mat-Xa, QTMAN
  • Links
    NCBI Gene ID: 79712
    neXtProt AC: NX_Q4AE62
    UniProt: Q4AE62

  • Chr Location
    2q22.3; chr2:143938068-144333069 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    760
  • Tissues
    7
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036890 Ensembl Gene Model | MGI Sequence Detail 363246 C57BL/6J ±  kb
transcript ENSMUST00000112810 Ensembl | MGI Sequence Detail 2564 Not Applicable  
polypeptide ENSMUSP00000108429 Ensembl | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory