Gene Expression Data
Assay Details
Assay
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Reference:
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J:32465
Galliot B, et al., The mouse Hox-1.4 gene: primary structure, evidence for promoter activity and expression during development. Development. 1989 Oct;107(2):343-59
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:2447476
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Gene symbol:
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Hoxa4
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Gene name:
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homeobox A4
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Results
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Specimen
8B:
embryonic day 13.5
(more )
Note: The plane of section is sagittal.
Specimen
8B:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 13.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
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Type:
|
section
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Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
9C:
embryonic day 7.5
(more )
Note: Transverse sections of the posterior region of the embryo.
Specimen
9C:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 7.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
|
Not Specified
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Type:
|
section
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Embedding:
|
Paraffin
|
Note:
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Transverse sections of the posterior region of the embryo.
|
Specimen
10B:
embryonic day 9.5
(more )
Note: The plane of section is transverse.
Specimen
10B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
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Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Specimen
10D:
embryonic day 9.5
(more )
Note: The plane of section is transverse.
Specimen
10D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Specimen
10F:
embryonic day 9.5
(more )
Note: The plane of section is transverse.
Specimen
10F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Specimen
11B:
embryonic day 12.5
(more )
Note: The plane of section is sagittal.
Specimen
11B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hindbrain |
Strong |
Regionally restricted |
11B
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Shows the anterior boundary of expression within the myelencephalon (immediately posterior to the otic vesicle).
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TS20: 4th ventricle |
Present |
Regionally restricted |
11B
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Boundary extends more anteriorly in the ventral floor of the ventricle than in the roof plate.
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TS20: spinal cord |
Present |
Graded |
11B
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Expression is strong in upper spinal cord and decreases posteriorly, while remaining above background levels up to the most posterior regions of the spinal cord.
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Specimen
11D:
embryonic day 12.5
(more )
Note: The plane of section is transverse.
Specimen
11D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hindbrain |
Strong |
Regionally restricted |
11C/D
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Shows the anterior boundary of expression within the myelencephalon (immediately posterior to the otic vesicle).
|
Specimen
Not shown:
embryonic day 15.5
(more )
Specimen
Not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: medulla oblongata |
Present |
|
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The ventral boundary of expression lies in the anterior part next to the limit between the medulla and the pons. Expression was present in the grey matter and absent in the white matter.
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Specimen
11E:
embryonic day 12.5
(more )
Note: The plane of section is transverse.
Specimen
11E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: dorsal root ganglion |
Present |
Graded |
11E
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Intensity of signal gradually decreases from the upper thoracic level to the most posterior ganglia.
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TS20: spinal cord mantle layer |
Strong |
|
11E
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Expression was detected in the ventral horns and the dorsal regions of cervical spinal cord.
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TS20: spinal cord |
Present |
Regionally restricted |
11E
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Expression was detected in the cervical spinal cord, but absent in the neuroepithelial layer.
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Specimen
11F:
embryonic day 12.5
(more )
Note: The plane of section is transverse.
Specimen
11F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: dorsal root ganglion |
Present |
Graded |
11F
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Intensity of signal gradually decreases from the upper thoracic level to the most posterior ganglia.
|
TS20: spinal cord mantle layer |
Strong |
Regionally restricted |
11F
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Expression was detected in the dorsal regions of thoracic spinal cord but was absent in the neuroepithelial layer.
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Specimen
11G:
embryonic day 12.5
(more )
Note: The plane of section is transverse.
Specimen
11G:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: spinal cord mantle layer |
Strong |
Regionally restricted |
11G
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Expression was detected in the dorsal regions of lumbar spinal cord but was absent in the neuroepithelial layer.
|
TS20: dorsal root ganglion |
Present |
Graded |
11G
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Intensity of signal gradually decreases from the upper thoracic level to the most posterior ganglia.
|
Specimen
12C:
embryonic day 12.5
(more )
Note: The plane of section is sagittal.
Specimen
12C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
12D:
embryonic day 13.5
(more )
Note: The plane of section is sagittal.
Specimen
12D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
12E:
embryonic day 13.5
(more )
Note: The plane of section is sagittal.
Specimen
12E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: rib cartilage condensation |
Strong |
Regionally restricted |
12E
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Expression was detected in the cells surrounding the cartilaginous cells; the central portion is absent.
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Specimen
13B:
embryonic day 12.5
(more )
Note: The plane of section is sagittal.
Specimen
13B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
13D:
embryonic day 12.5
(more )
Note: The plane is cross-section.
Specimen
13D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane is cross-section.
|
Specimen
13F:
embryonic day 15.5
(more )
Note: The plane of section is sagittal.
Specimen
13F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
14B:
embryonic day 12.5
(more )
Note: The plane of section is sagittal.
Specimen
14B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diaphragm |
Strong |
|
14A/B
|
|
TS21: gut |
Present |
Regionally restricted |
14A/B
|
Expression was detected in the mesenchymal cells but was absent from the epithelium.
|
TS21: stomach |
Present |
Regionally restricted |
14A/B
|
Expression was detected in the mesenchymal cells but was absent from the epithelium.
|
TS21: urinary system |
Weak |
Regionally restricted |
14A/B
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Expression was detected in the mesonephros.
|
Specimen
14D:
embryonic day 12.5
(more )
Note: The plane of section is transverse.
Specimen
14D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is transverse.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: gut |
Present |
Regionally restricted |
14C/D
|
Expression was detected in the mesenchymal cells but was absent from the epithelium.
|
TS20: stomach |
Present |
Regionally restricted |
14C/D
|
Expression was detected in the mesenchymal cells but was absent from the epithelium.
|
Specimen
14F:
embryonic day 15.5
(more )
Note: The plane of section is sagittal.
Specimen
14F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: gut |
Present |
Regionally restricted |
14E/F
|
Expression was detected in the mesenchymal cells but was absent from the epithelium. Double layer of positive cells due to muscle differentiation.
|
Specimen
14H:
embryonic day 15.5
(more )
Note: The plane of section is sagittal.
Specimen
14H:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
Note:
|
The plane of section is sagittal.
|
Specimen
Not shown:
embryonic day 9.5
(more )
Specimen
Not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Embedding:
|
Paraffin
|
|