About   Help   FAQ
Podn Gene Detail
Summary
  • Symbol
    Podn
  • Name
    podocan
  • Synonyms
    SLRR5A
  • Feature Type
    protein coding gene
  • IDs
    MGI:2674939
    NCBI Gene: 242608
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:107871988-107889534 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    585 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2674939
 protein coding gene Chr4:107871988-107889544 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028547
 protein coding gene Chr4:108726069-108747938 (-)
A/J MGP_AJ_G0028510
 protein coding gene Chr4:104818689-104906874 (-)
AKR/J MGP_AKRJ_G0028457
 protein coding gene Chr4:107395715-107493289 (-)
BALB/cJ MGP_BALBcJ_G0028529
 protein coding gene Chr4:105025508-105043130 (-)
C3H/HeJ MGP_C3HHeJ_G0028243
 protein coding gene Chr4:108139619-108157961 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028969
 protein coding gene Chr4:112626659-112644187 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026260
 protein coding gene Chr4:100125505-100209153 (-)
CAST/EiJ MGP_CASTEiJ_G0027679
 protein coding gene Chr4:105974889-106070821 (-)
CBA/J MGP_CBAJ_G0028212
 protein coding gene Chr4:116281137-116298665 (-)
DBA/2J MGP_DBA2J_G0028360
 protein coding gene Chr4:104443300-104460892 (-)
FVB/NJ MGP_FVBNJ_G0028328
 protein coding gene Chr4:103312679-103331171 (-)
LP/J MGP_LPJ_G0028461
 protein coding gene Chr4:108928886-108946422 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028354
 protein coding gene Chr4:121534025-121551570 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029005
 protein coding gene Chr4:107644940-107736265 (-)
PWK/PhJ MGP_PWKPhJ_G0027405
 protein coding gene Chr4:102699355-102717344 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027229
 protein coding gene Chr4:105013490-105030999 (-)
WSB/EiJ MGP_WSBEiJ_G0027760
 protein coding gene Chr4:107829259-107917633 (-)



Homology
more
  • Human Ortholog
    PODN, podocan
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PODN, podocan
  • Synonyms
    PCAN, SLRR5A
  • Links
    NCBI Gene ID: 127435
    neXtProt AC: NX_Q7Z5L7
    UniProt: Q7Z5L7

  • Chr Location
    1p32.3; chr1:53062052-53085501 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1148
  • Tissues
    68
  • cDNA Data
    15
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000028600 Ensembl Gene Model | MGI Sequence Detail 17547 C57BL/6J ±  kb
    transcript ENSMUST00000106709 Ensembl | MGI Sequence Detail 3170 Not Applicable  
    polypeptide ENSMUSP00000102320 Ensembl | MGI Sequence Detail 611 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 15

      Microarray probesets 2
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 17
    • Earliest
      J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory