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Trim56 Gene Detail
Summary
  • Symbol
    Trim56
  • Name
    tripartite motif-containing 56
  • Synonyms
    A130009K11Rik, LOC384309, RNF109
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685298
    NCBI Gene: 384309
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:137140140-137145313 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 76.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    230 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685298
 protein coding gene Chr5:137134498-137145313 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030217
 protein coding gene Chr5:141836717-141847274 (-)
A/J MGP_AJ_G0030185
 protein coding gene Chr5:135679106-135689683 (-)
AKR/J MGP_AKRJ_G0030118
 protein coding gene Chr5:140085524-140097988 (-)
BALB/cJ MGP_BALBcJ_G0030195
 protein coding gene Chr5:137039303-137050700 (-)
C3H/HeJ MGP_C3HHeJ_G0029911
 protein coding gene Chr5:140713416-140725050 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030647
 protein coding gene Chr5:147093850-147105751 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027866
 protein coding gene Chr5:129951224-129958930 (-)
CAST/EiJ MGP_CASTEiJ_G0029321
 protein coding gene Chr5:140117695-140128169 (-)
CBA/J MGP_CBAJ_G0029881
 protein coding gene Chr5:152870154-152884241 (-)
DBA/2J MGP_DBA2J_G0030032
 protein coding gene Chr5:135575659-135586442 (-)
FVB/NJ MGP_FVBNJ_G0029987
 protein coding gene Chr5:134759959-134773166 (-)
LP/J MGP_LPJ_G0030121
 protein coding gene Chr5:142266191-142279576 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030019
 protein coding gene Chr5:155749197-155760891 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030688
 protein coding gene Chr5:139908747-139920873 (-)
PWK/PhJ MGP_PWKPhJ_G0029034
 protein coding gene Chr5:134667145-134678090 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028870
 protein coding gene Chr5:137499036-137510031 (-)
WSB/EiJ MGP_WSBEiJ_G0029394
 protein coding gene Chr5:140650888-140662909 (-)



Homology
more
  • Human Ortholog
    TRIM56, tripartite motif containing 56
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM56, tripartite motif containing 56
  • Synonyms
    RNF109
  • Links
    NCBI Gene ID: 81844
    neXtProt AC: NX_Q9BRZ2
    UniProt: Q9BRZ2

  • Chr Location
    7q22.1; chr7:101085481-101097967 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    24
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 384309 NCBI Gene Model | MGI Sequence Detail 5174 C57BL/6J ±  kb
    transcript NM_201373 RefSeq | MGI Sequence Detail 3637 C57BL/6  
    polypeptide Q80VI1 UniProt | EBI | MGI Sequence Detail 734 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4

      Microarray probesets 2
    References
    more
    • Summaries
      All 32
      Gene Ontology 6
      Phenotypes 10
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory