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Cspg4b Gene Detail
Summary
  • Symbol
    Cspg4b
  • Name
    chondroitin sulfate proteoglycan 4B
  • Synonyms
    BC067074
  • Feature Type
    protein coding gene
  • IDs
    MGI:3040697
    NCBI Gene: 408066
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:113429570-113507049 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 63.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2497 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3040697
 protein coding gene Chr13:113429570-113516245 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020951
 protein coding gene Chr13:115922362-116011373 (+)
A/J MGP_AJ_G0020901
 protein coding gene Chr13:111290430-111381520 (+)
AKR/J MGP_AKRJ_G0020876
 protein coding gene Chr13:114631377-114718453 (+)
BALB/cJ MGP_BALBcJ_G0020901
 protein coding gene Chr13:111966130-112053299 (+)
C3H/HeJ MGP_C3HHeJ_G0020690
 protein coding gene Chr13:114414939-114505934 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021337
 protein coding gene Chr13:119336382-119440791 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018906
 protein coding gene Chr13:106564147-106640809 (+)
CAST/EiJ MGP_CASTEiJ_G0020209
 protein coding gene Chr13:114076037-114154103 (+)
CBA/J MGP_CBAJ_G0020652
 protein coding gene Chr13:123910422-124014291 (+)
DBA/2J MGP_DBA2J_G0020775
 protein coding gene Chr13:110983485-111065540 (+)
FVB/NJ MGP_FVBNJ_G0020759
 protein coding gene Chr13:109667572-109751309 (+)
LP/J MGP_LPJ_G0020851
 protein coding gene Chr13:115952138-116048702 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020787
 protein coding gene Chr13:124215611-124304456 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021373
 protein coding gene Chr13:114103278-114197706 (+)
PWK/PhJ MGP_PWKPhJ_G0019963
 protein coding gene Chr13:109739584-109826190 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019784
 protein coding gene Chr13:110422310-110509207 (+)
WSB/EiJ MGP_WSBEiJ_G0020267
 protein coding gene Chr13:114692043-114778266 (+)



Homology
more
  • Human Ortholog
    CSPG4BP, chondroitin sulfate proteoglycan family member 4B, pseudogene
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSPG4BP, chondroitin sulfate proteoglycan family member 4B, pseudogene
  • Links
    NCBI Gene ID: 727930

  • Chr Location
    5q11.2; chr5:54808210-54872551 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    37
  • RefSeq
    7
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 408066 NCBI Gene Model | MGI Sequence Detail 77480 C57BL/6J ±  kb
transcript NM_001378698 RefSeq | MGI Sequence Detail 8261 C57BL/6  
polypeptide NP_001365627 RefSeq | MGI Sequence Detail 2391 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR039005 CSPG repeat
    IPR051561 FRAS1-related extracellular matrix
    IPR001791 Laminin G domain
  • GlyGen
    F6RXI4 12 sites, 5 N-linked glycans (12 sites)
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory