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Gene Expression Data
Assay Details
Assay
Reference: J:101679 Deltagen Inc, NIH initiative supporting placement of Deltagen, Inc. mice into public repositories. MGI Direct Data Submission. 2005;
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:3639252
Gene symbol: Sema5a
Gene name: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
Reporter: lacZ
Direct Detection
Results
Specimen Mouse 250178 - Image 99190040: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: ovary Strong 99190040 There is scattered expression in the ovary, including in the stroma. In addition, expression is frequently seen in the blood vessels of the ovary.
TS28: blood vessel Strong Regionally restricted 99190040 Expression is frequently seen in the blood vessels of the ovary.
TS28: ovary follicle Strong 99190040 There is scattered expression in the follicle.

Specimen Mouse 250178 - Image 99190062: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: uterus Strong 99190062 Expression is frequently seen in the uterus.
TS28: endometrium glandular epithelium Absent 99190062
TS28: endometrium stroma Strong 99190062 There is scattered expression in the endometrial stroma.
TS28: myometrium Strong 99190062 Expression is frequently seen in the myometrium.

Specimen Mouse 250178 - Image 99190068: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: cervix uteri Strong 99190068 There is scattered expression in the cervix. Expression is frequently seen in the lamina propria and in the stroma.

Specimen Mouse 250178 - Image 99191230: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: brain Moderate 99191230 Expression is frequently seen in the brain.
TS28: telencephalon Moderate 99191230 Expression is frequently seen in the cerebrum.

Specimen Mouse 250178 - Image 99191231: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Moderate 99191231 Expression is frequently seen in the cerebellum.

Specimen Mouse 250178 - Image 99191232: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: brainstem Moderate 99191232 Expression is frequently seen in the brainstem.

Specimen Mouse 250178 - Image 99193236: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: bladder Strong 99193236 There is scattered expression in the urinary bladder.
TS28: urothelium of bladder Strong Regionally restricted 99193236 There is scattered expression in the epithelium.
TS28: lamina propria of bladder Strong 99193236 Expression is frequently seen in the muscularis.

Specimen Mouse 250178 - Image 99193239: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: thymus Strong 99193239 There is scattered expression in the thymus.

Specimen Mouse 250178: postnatal day 52; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: adenohypophysis pars anterior Moderate Expression is frequently seen in the pars distalis.
TS28: adenohypophysis pars intermedia Weak There is scattered expression in the pars intermedia.
TS28: neurohypophysis pars nervosa Moderate There is scattered expression in the pars nervosa.
TS28: bone marrow Absent
TS28: thymus cortex Strong There is occasional staining in the cortex.
TS28: thymus medullary core Strong There is scattered expression in the medulla.
TS28: spinal cord central canal Weak There is scattered expression in the central canal.
TS28: spinal cord gray matter Strong There is scattered expression in the grey matter.
TS28: spinal cord white matter Very strong Expression is frequently seen in the white matter.
TS28: extrinsic ocular muscle Moderate There is scattered expression in the extraocular muscles.
TS28: retina ganglion cell layer Moderate There is scattered expression in the ganglion cell layer.
TS28: retina inner nuclear layer Strong Expression is frequently seen in the inner nuclear layer.
TS28: lens Strong Expression is frequently seen in the lens.

Specimen Mouse 254483 - Image 99189335: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: corpus callosum Strong 99189335 Expression is frequently seen in the corpus callosum.
TS28: dentate gyrus Strong 99189335 Expression is present in practically all cells of the dentate gyrus.
TS28: hippocampus Strong 99189335 There is scattered expression in the hippocampus.

Specimen Mouse 254483 - Image 99189338: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Strong 99189338 There is scattered expression in the cortex.

Specimen Mouse 254483 - Image 99189339: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: telencephalon Strong Regionally restricted 99189339 There is scattered expression in the choroid plexus of the cerebrum.
TS28: choroid plexus Strong Regionally restricted 99189339 There is scattered expression in the choroid plexus of the cerebrum.
TS28: brain ventricle Strong Regionally restricted 99189339 There is scattered expression in a ventricle in the cerebrum.

Specimen Mouse 254483 - Image 99189340: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: thalamus Strong 99189340 There is scattered expression in the thalamus.

Specimen Mouse 254483 - Image 99189754: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: anterior commissure Strong 99189754 Expression is frequently seen in the anterior commissure.
TS28: caudate-putamen Strong 99189754 There is scattered expression in the caudate-putamen.
TS28: lateral septal complex Moderate Regionally restricted 99189754 Expression is frequently seen in the lateral septal nucleus.

Specimen Mouse 254483 - Image 99189755: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: hypothalamus Strong 99189755 There is scattered expression in the hypothalamus.

Specimen Mouse 254483 - Image 99189756: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: telencephalon Strong Regionally restricted 99189756 There is scattered expression in the cerebral meninges.
TS28: meninges Strong Regionally restricted 99189756 There is scattered expression in the cerebral meninges.

Specimen Mouse 254483 - Image 99189757: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong 99189757 There is scattered expression in the cerebellum.

Specimen Mouse 254483 - Image 99189758: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong Regionally restricted 99189758 There is scattered expression in the blood vessels of the cerebellum.
TS28: blood vessel Strong Regionally restricted 99189758 There is scattered expression in the blood vessels of the cerebellum.
TS28: cerebellum granule cell layer Strong 99189758 There is occasional staining in the granule layer.
TS28: cerebellum molecular layer Strong 99189758 There is occasional staining in the molecular layer.
TS28: cerebellum Purkinje cell layer Weak 99189758 There is scattered expression in the Purkinje cell layer.
TS28: cerebellum white matter Strong 99189758 Expression is frequently seen in the white matter.

Specimen Mouse 254483 - Image 99189759: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: brainstem Strong 99189759 Expression is frequently seen in the brainstem.

Specimen Mouse 254483 - Image 99189761: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: spinal cord central canal Weak 99189761 There is scattered expression in the central canal.
TS28: spinal cord gray matter Moderate 99189761 There is occasional staining in the grey matter.
TS28: spinal cord white matter Very strong 99189761 Expression is frequently seen in the white matter.

Specimen Mouse 254483 - Image 99189762: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: adenohypophysis pars anterior Moderate 99189762 Expression is frequently seen in the pars distalis.

Specimen Mouse 254483 - Image 99189763: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: adenohypophysis pars intermedia Weak 99189763 There is scattered expression in the pars intermedia.

Specimen Mouse 254483 - Image 99189764: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: lymph node Strong 99189764 There is scattered expression in the lymph nodes.

Specimen Mouse 254483 - Image 99189765: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: spleen Strong 99189765 There is scattered expression in the spleen. In addition, expression is frequently seen in the blood vessels of the spleen.
TS28: blood vessel Strong Regionally restricted 99189765 Expression is frequently seen in the blood vessels of the spleen.
TS28: spleen capsule Strong 99189765 Expression is frequently seen in the capsule.
TS28: spleen trabeculum Strong 99189765 Expression is frequently seen in the trabeculae.

Specimen Mouse 254483 - Image 99189766: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: pancreas Strong 99189766 There is scattered expression in the pancreas.

Specimen Mouse 254483 - Image 99189783: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: bladder Strong 99189783 There is scattered expression in the urinary bladder.
TS28: urothelium of bladder Strong Regionally restricted 99189783 There is occasional staining in the epithelium.
TS28: lamina propria of bladder Strong 99189783 Expression is frequently seen in the muscularis.

Specimen Mouse 254483 - Image 99189785: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: prostate gland Strong 99189785 There is scattered expression in the prostate gland.

Specimen Mouse 254483 - Image 99189792: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: testis Strong 99189792 There is scattered expression in the testis.

Specimen Mouse 254483 - Image 99189798: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: metanephros Strong 99189798 Expression is frequently seen in the kidney.

Specimen Mouse 254483 - Image 99189803: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: adrenal gland Moderate Regionally restricted 99189803 There is scattered expression in the capsule.
TS28: adrenal medulla Weak 99189803 There is scattered expression in the medulla.

Specimen Mouse 254483 - Image 99189810: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: lung Strong 99189810 There is scattered expression in the lung. In addition, expression is frequently seen in the blood vessels of the lung.
TS28: lung alveolus Strong 99189810 There is scattered expression in the alveoli.
TS28: bronchiole Strong 99189810 There is scattered expression in the bronchioles.

Specimen Mouse 254483 - Image 99189814: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: liver Strong 99189814 There is scattered expression in the liver.

Specimen Mouse 254483 - Image 99189820: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: heart Strong Regionally restricted 99189820 Expression is frequently seen in the blood vessels of the heart.
TS28: blood vessel Strong Regionally restricted 99189820 Expression is frequently seen in the blood vessels of the heart.
TS28: cardiac muscle tissue Strong 99189820 There is scattered expression in the myocardium.

Specimen Mouse 254483 - Image 99189835: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: lens Strong 99189835 Expression is frequently seen in the lens.

Specimen Mouse 254483 - Image 99189836: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: optic nerve Strong 99189836 There is scattered expression in the optic nerve.

Specimen Mouse 254483 - Image 99189839: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: thymus Strong Regionally restricted 99189839 There is scattered expression in the blood vessels of the thymus.
TS28: blood vessel Strong Regionally restricted 99189839 There is scattered expression in the blood vessels of the thymus.

Specimen Mouse 254483 - Image 99189841: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: thyroid gland Strong 99189841 There is scattered expression in the thyroid gland. In addition, expression is frequently seen in the blood vessels of the thyroid gland.
TS28: blood vessel Strong Regionally restricted 99189841 Expression is frequently seen in the blood vessels of teh th.

Specimen Mouse 254483 - Image 99189844: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: skin Strong 99189844 There is scattered expression in the skin. In addition, expression is frequently seen in the blood vessels of the skin.
TS28: blood vessel Strong Regionally restricted 99189844 Expression is frequently seen in the blood vessels of the skin.
TS28: hair follicle Strong 99189844 Expression is frequently seen in the hair follicles.

Specimen Mouse 254483 - Image 99189848: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: skeletal muscle Strong Regionally restricted 99189848 Expression is frequently seen in the blood vessels of the skeletal muscles.
TS28: blood vessel Strong Regionally restricted 99189848 Expression is frequently seen in the blood vessels of the skeletal muscles.

Specimen Mouse 254483 - Image 99193229: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: lymph node capsule Very strong 99193229 Expression is frequently seen in the capsule.

Specimen Mouse 254483 - Image 99193288: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: glomerular tuft Strong 99193288 Expression is frequently seen in the glomeruli.

Specimen Mouse 254483 - Image 99193294: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: renal cortex Strong 99193294 There is scattered expression in the cortex.
TS28: renal medulla Strong 99193294 There is scattered expression in the medulla.
TS28: renal papilla Strong 99193294 Expression is present in practically all cells of the papilla.

Specimen Mouse 254483 - Image 99193301: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: adrenal cortex Strong 99193301 There is scattered expression in the cortex.

Specimen Mouse 254483 - Image 99193308: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: pancreas Strong Regionally restricted 99193308 Expression is frequently seen in the blood vessels of the pancreas.
TS28: blood vessel Strong Regionally restricted 99193308 Expression is frequently seen in the blood vessels of the pancreas.
TS28: pancreatic duct Strong 99193308 Expression is frequently seen in the duct.
TS28: islets of Langerhans Strong 99193308 There is occasional staining in the islets of Langerhans.

Specimen Mouse 254483 - Image 99193319: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: liver Strong Regionally restricted 99193319 Expression is frequently seen in the blood vessels of the liver.
TS28: blood vessel Strong Regionally restricted 99193319 Expression is frequently seen in the blood vessels of the liver.
TS28: bile duct Strong 99193319 Expression is frequently seen in the bile duct.

Specimen Mouse 254483 - Image 99193337: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: sciatic nerve Strong 99193337 Expression is frequently seen in the sciatic nerve.

Specimen Mouse 254483 - Image 99193354: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: seminiferous tubule Strong 99193354 There is scattered expression in the seminiferous tubules.

Specimen Mouse 254483 - Image 99193362: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: thymus Strong 99193362 There is scattered expression in the thymus.
TS28: thymus medullary core Strong 99193362 There is occasional staining in the medulla.

Specimen Mouse 254483 - Image 99193370: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: retina ganglion cell layer Weak 99193370 There is scattered expression in the ganglion cell layer.
TS28: pigmented retinal epithelium Strong 99193370 Expression is frequently seen in the pigment layer.

Specimen Mouse 254483 - Image 99193372: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: retina inner nuclear layer Strong 99193372 Expression is frequently seen in the inner nuclear layer.

Specimen Mouse 254483 - Image 99193375: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: ampullary gland Strong 99193375 Expression is frequently seen in the ampullary glands.

Specimen Mouse 254483 - Image 99193380: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: brain Strong 99193380 There is scattered expression in the brain.

Specimen Mouse 254483: postnatal day 57; Sema5atm1Dgen/Sema5a+ (more )
Structure Level Pattern Image Note
TS28: aorta Strong Expression is present in practically all cells of the aorta.
TS28: neurohypophysis pars nervosa Trace There is occasional staining in the pars nervosa.
TS28: bone marrow Absent
TS28: skeletal muscle Strong There is scattered expression in the skeletal muscle.


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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory