Trav19 MGI Mouse Gene Detail - MGI:3649383 - T cell receptor alpha variable 19

Sequence Map

Chr14:54082779-54083284 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649383	gene segment	Chr14:54082691-54083284 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002568	gene segment	Chr14:47768053-47768646 (+)
A/J	MGP_AJ_G0002539	gene segment	Chr14:46870815-46871408 (+)
AKR/J	MGP_AKRJ_G0002530	gene segment	Chr14:48563294-48563887 (+)
BALB/cJ	MGP_BALBcJ_G0002525	gene segment	Chr14:46838709-46839302 (+)
C3H/HeJ	MGP_C3HHeJ_G0002492	gene segment	Chr14:48243192-48243785 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002666	gene segment	Chr14:50206688-50207281 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002236	gene segment	Chr14:45303593-45304234 (+)
CAST/EiJ	MGP_CASTEiJ_G0002478	gene segment	Chr14:44492791-44493384 (+)
CBA/J	MGP_CBAJ_G0002491	gene segment	Chr14:51698483-51699076 (+)
DBA/2J	MGP_DBA2J_G0002495	gene segment	Chr14:46594529-46595122 (+)
FVB/NJ	MGP_FVBNJ_G0002523	gene segment	Chr14:46077574-46078167 (+)
LP/J	MGP_LPJ_G0002574	gene segment	Chr14:48791667-48792260 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002498	gene segment	Chr14:51135907-51136500 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002676	gene segment	Chr14:47750815-47751408 (+)
PWK/PhJ	MGP_PWKPhJ_G0002437	gene segment	Chr14:43142914-43143507 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002389	gene segment	Chr14:43731937-43732530 (+)
WSB/EiJ	MGP_WSBEiJ_G0002493	gene segment	Chr14:48050827-48051422 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	547428	NCBI Gene Model \| MGI Sequence Detail	506	C57BL/6J	± kb
transcript	X72904	GenBank \| ENA \| DDBJ \| MGI Sequence Detail	519	BALB/c
polypeptide	A0A0B4J1K4	UniProt \| EBI \| MGI Sequence Detail	119	Not Applicable

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Summaries

All 15

Gene Ontology 1
Earliest

J:15520 Marche PN, et al., T cell receptor V alpha gene segment with alternate splicing in the junctional region. J Immunol. 1993 Nov 15;151(10):5319-27
Latest

J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav19:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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