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Gene Expression Data
Assay Details
Assay
Reference: J:61081 Lee S, et al., Expression and regulation of a gene encoding neural recognition molecule NB-3 of the contactin/F3 subgroup in mouse brain. Gene. 2000 Mar 21;245(2):253-66
Assay type: RNA in situ
MGI Accession ID: MGI:4421769
Gene symbol: Cntn6
Gene name: contactin 6
Probe: NB-3 cDNA3
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Bodian-fixed (80% ethanol and 10% formaldehyde). The authors did not specify which probe was used to obtain the data in Table 1, the NB-3 cDNA2 (MGI:4421766) may have been used. The data in Table 1 was obtained from brains at postnatal day 1 and and 7, no differences in expression patterns were observed between these two time points.
Results
Specimen 4A: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cortical layer II Present 4A
TS27: cortical layer III Present 4A
TS27: cortical layer V Present 4A
TS27: cerebral cortex Present Regionally restricted 4A Expression is in the subplate of the cerebral neocortex.

Specimen 4B: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: inferior colliculus Very strong 4B
TS27: locus coeruleus Very strong 4B
TS27: red nucleus Very strong 4B
TS27: trigeminal nucleus Very strong 4B

Specimen 4C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 4C
TS28: deep cerebellar nucleus Present 4C

Specimen 4D: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: dorsal motor nucleus of vagus nerve Present 4D
TS27: hypoglossal nucleus Present 4D
TS27: inferior olivary nucleus Present 4D
TS27: trigeminal V spinal sensory nucleus Present 4D

Specimen Table 1 P1: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: accessory olfactory bulb Strong
TS27: anterior thalamic group Strong
TS27: hippocampus CA1 Strong
TS27: inferior colliculus Strong
TS27: inferior olivary nucleus Strong
TS27: piriform cortex Strong
TS27: trigeminal V mesencephalic nucleus Strong
TS27: trigeminal nucleus Strong
TS27: anterior olfactory nucleus Present
TS27: basolateral amygdaloid nucleus Present
TS27: cochlear nucleus Present
TS27: cortical layer II Present
TS27: cortical layer III Present
TS27: cortical layer V Present
TS27: deep cerebellar nucleus Present
TS27: dorsal motor nucleus of vagus nerve Present
TS27: dorsal tegmental nucleus Present
TS27: facial nucleus Present
TS27: hypoglossal nucleus Present
TS27: lateral geniculate nucleus Present
TS27: lateral reticular nucleus Present
TS27: locus coeruleus Present
TS27: medial geniculate nucleus Present
TS27: parabrachial nucleus Present
TS27: paraventricular hypothalamic nucleus Present
TS27: red nucleus Present
TS27: solitary tract nucleus Present
TS27: subiculum Present
TS27: superior colliculus Present
TS27: superior olivary nucleus Present
TS27: trigeminal V motor nucleus Present
TS27: trigeminal V spinal sensory nucleus Present
TS27: ventral posterior lateral thalamic nucleus Present
TS27: ventral posterior medial thalamic nucleus Present
TS27: ventromedial hypothalamic nucleus Present
TS27: neocortex layer Present Regionally restricted Expression is in the subplate.
TS27: amygdala Present Regionally restricted Expression is in the dorsolateral and corticomedial nuclei.
TS27: cerebellum Purkinje cell layer Present Regionally restricted Expression is in lobule 9 and 10 only.
TS27: accumbens nucleus Absent
TS27: arcuate nucleus Absent
TS27: caudate-putamen Absent
TS27: cerebellum granule cell layer Absent
TS27: cortical layer IV Absent
TS27: cortical layer VI Absent
TS27: dentate gyrus Absent
TS27: dorsomedial hypothalamic nucleus Absent
TS27: entorhinal cortex Absent
TS27: globus pallidus Absent
TS27: hippocampus CA3 Absent
TS27: lateral septal nucleus Absent
TS27: main olfactory bulb external plexiform layer Absent
TS27: main olfactory bulb glomerular layer Absent
TS27: main olfactory bulb granule cell layer Absent
TS27: main olfactory bulb mitral cell layer Absent
TS27: medial septal nucleus Absent
TS27: reticular thalamic nucleus Absent
TS27: substantia nigra Absent
TS27: supraoptic nucleus Absent
TS27: ventral tegmental area Absent

Specimen Table 1 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: accessory olfactory bulb Strong
TS28: anterior thalamic group Strong
TS28: hippocampus CA1 Strong
TS28: inferior colliculus Strong
TS28: inferior olivary nucleus Strong
TS28: piriform cortex Strong
TS28: trigeminal V mesencephalic nucleus Strong
TS28: trigeminal nucleus Strong
TS28: anterior olfactory nucleus Present
TS28: basolateral amygdaloid nucleus Present
TS28: cochlear nucleus Present
TS28: cortical layer II Present
TS28: cortical layer III Present
TS28: cortical layer V Present
TS28: deep cerebellar nucleus Present
TS28: dorsal motor nucleus of vagus nerve Present
TS28: dorsal tegmental nucleus Present
TS28: facial nucleus Present
TS28: hypoglossal nucleus Present
TS28: lateral geniculate nucleus Present
TS28: lateral reticular nucleus Present
TS28: locus coeruleus Present
TS28: medial geniculate nucleus Present
TS28: parabrachial nucleus Present
TS28: paraventricular hypothalamic nucleus Present
TS28: red nucleus Present
TS28: solitary tract nucleus Present
TS28: subiculum Present
TS28: superior colliculus Present
TS28: superior olivary nucleus Present
TS28: trigeminal V motor nucleus Present
TS28: trigeminal V spinal sensory nucleus Present
TS28: ventral posterior lateral thalamic nucleus Present
TS28: ventral posterior medial thalamic nucleus Present
TS28: ventromedial hypothalamic nucleus Present
TS28: neocortex layer Present Regionally restricted Expression is in the subplate.
TS28: amygdala Present Regionally restricted Expression is in the dorsolateral and corticomedial nuclei.
TS28: cerebellum Purkinje cell layer Present Regionally restricted Expression is in lobule 9 and 10 only.
TS28: accumbens nucleus Absent
TS28: arcuate nucleus Absent
TS28: caudate-putamen Absent
TS28: cerebellum granule cell layer Absent
TS28: cortical layer IV Absent
TS28: cortical layer VI Absent
TS28: dentate gyrus Absent
TS28: dorsomedial hypothalamic nucleus Absent
TS28: entorhinal cortex Absent
TS28: globus pallidus Absent
TS28: hippocampus CA3 Absent
TS28: lateral septal nucleus Absent
TS28: main olfactory bulb external plexiform layer Absent
TS28: main olfactory bulb glomerular layer Absent
TS28: main olfactory bulb granule cell layer Absent
TS28: main olfactory bulb mitral cell layer Absent
TS28: medial septal nucleus Absent
TS28: reticular thalamic nucleus Absent
TS28: substantia nigra Absent
TS28: supraoptic nucleus Absent
TS28: ventral tegmental area Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory