About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823893
Gene symbol: Clca3a2
Gene name: chloride channel accessory 3A2
Probe: MGC clone 5738
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007074_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_01
Specimen euxassay_007074_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_02
Specimen euxassay_007074_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_03
Specimen euxassay_007074_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_04
Specimen euxassay_007074_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_05
TS23: ovary Strong Regionally restricted euxassay_007074_05
Specimen euxassay_007074_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_06
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_06
TS23: ovary Strong Regionally restricted euxassay_007074_06
Specimen euxassay_007074_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_07
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_07
TS23: heart atrium Moderate Regionally restricted euxassay_007074_07
TS23: ovary Strong Regionally restricted euxassay_007074_07
TS23: thalamus mantle layer Weak Regionally restricted euxassay_007074_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_007074_07 trigeminal motor nucleus
Specimen euxassay_007074_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_08
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_08
TS23: heart atrium Moderate Regionally restricted euxassay_007074_08
TS23: ovary Strong Regionally restricted euxassay_007074_08
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_08
TS23: midgut Weak Regionally restricted euxassay_007074_08
TS23: thalamus mantle layer Weak Regionally restricted euxassay_007074_08
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_007074_08
Specimen euxassay_007074_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_09
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_09
TS23: heart atrium Moderate Regionally restricted euxassay_007074_09
TS23: ovary Strong Regionally restricted euxassay_007074_09
TS23: metanephros Strong Regionally restricted euxassay_007074_09
TS23: adrenal gland Moderate Regionally restricted euxassay_007074_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_09
TS23: midgut Weak Regionally restricted euxassay_007074_09
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_007074_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_007074_09 facial motor nucleus
Specimen euxassay_007074_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_10
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_10
TS23: heart atrium Moderate Regionally restricted euxassay_007074_10
TS23: metanephros Strong Regionally restricted euxassay_007074_10
TS23: adrenal gland Moderate Regionally restricted euxassay_007074_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_10
TS23: pancreas Strong Regionally restricted euxassay_007074_10
TS23: midgut Weak Regionally restricted euxassay_007074_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007074_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_007074_10 facial motor nucleus
Specimen euxassay_007074_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_11
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_11
TS23: metanephros Strong Regionally restricted euxassay_007074_11
TS23: adrenal gland Moderate Regionally restricted euxassay_007074_11
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_11
TS23: pancreas Strong Regionally restricted euxassay_007074_11
TS23: midgut Weak Regionally restricted euxassay_007074_11
TS23: aorta Strong Regionally restricted euxassay_007074_11
TS23: thyroid gland Strong Regionally restricted euxassay_007074_11
Specimen euxassay_007074_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_12
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_12
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_12
TS23: pancreas Moderate Regionally restricted euxassay_007074_12
TS23: bladder Strong Regionally restricted euxassay_007074_12
TS23: midgut Weak Regionally restricted euxassay_007074_12
TS23: thymus primordium Moderate Regionally restricted euxassay_007074_12
TS23: aorta Strong Regionally restricted euxassay_007074_12
Specimen euxassay_007074_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_13
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_13
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_13
TS23: bladder Strong Regionally restricted euxassay_007074_13
TS23: urethra Strong Regionally restricted euxassay_007074_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_007074_13
TS23: thymus primordium Moderate Regionally restricted euxassay_007074_13
TS23: aorta Strong Regionally restricted euxassay_007074_13
TS23: trachea Weak Regionally restricted euxassay_007074_13
Specimen euxassay_007074_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_14
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_14
TS23: heart atrium Moderate Regionally restricted euxassay_007074_14
TS23: bladder Strong Regionally restricted euxassay_007074_14
TS23: urethra Strong Regionally restricted euxassay_007074_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_007074_14
TS23: aorta Strong Regionally restricted euxassay_007074_14
TS23: trachea Weak Regionally restricted euxassay_007074_14
Specimen euxassay_007074_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_15
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_15
TS23: heart atrium Moderate Regionally restricted euxassay_007074_15
TS23: bladder Strong Regionally restricted euxassay_007074_15
TS23: urethra Strong Regionally restricted euxassay_007074_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: midgut Weak Regionally restricted euxassay_007074_15
TS23: thymus primordium Moderate Regionally restricted euxassay_007074_15
TS23: aorta Strong Regionally restricted euxassay_007074_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007074_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_007074_15 facial motor nucleus
Specimen euxassay_007074_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_16
TS23: heart atrium Moderate Regionally restricted euxassay_007074_16
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_16
TS23: midgut Weak Regionally restricted euxassay_007074_16
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_007074_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_007074_16 facial motor nucleus
TS23: thyroid gland Strong Regionally restricted euxassay_007074_16
Specimen euxassay_007074_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_17
TS23: heart atrium Moderate Regionally restricted euxassay_007074_17
TS23: heart ventricle Moderate Regionally restricted euxassay_007074_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_17
TS23: midgut Weak Regionally restricted euxassay_007074_17
TS23: thalamus mantle layer Weak Regionally restricted euxassay_007074_17
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_007074_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_007074_17 trigeminal motor nucleus
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_007074_17 facial motor nucleus
Specimen euxassay_007074_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_18
TS23: heart atrium Moderate Regionally restricted euxassay_007074_18
TS23: metanephros Strong Regionally restricted euxassay_007074_18
TS23: adrenal gland Weak Regionally restricted euxassay_007074_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_18
TS23: midgut Weak Regionally restricted euxassay_007074_18
TS23: thalamus mantle layer Weak Regionally restricted euxassay_007074_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_007074_18 trigeminal motor nucleus
Specimen euxassay_007074_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_19
TS23: heart atrium Moderate Regionally restricted euxassay_007074_19
TS23: metanephros Strong Regionally restricted euxassay_007074_19
TS23: adrenal gland Weak Regionally restricted euxassay_007074_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_007074_19
Specimen euxassay_007074_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_20
TS23: heart atrium Moderate Regionally restricted euxassay_007074_20
TS23: metanephros Strong Regionally restricted euxassay_007074_20
TS23: adrenal gland Weak Regionally restricted euxassay_007074_20
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007074_20
Specimen euxassay_007074_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_21
TS23: heart atrium Moderate Regionally restricted euxassay_007074_21
TS23: ovary Strong Regionally restricted euxassay_007074_21
TS23: metanephros Strong Regionally restricted euxassay_007074_21
TS23: adrenal gland Weak Regionally restricted euxassay_007074_21
TS23: turbinate bone primordium Weak Regionally restricted euxassay_007074_21
Specimen euxassay_007074_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_22
TS23: heart atrium Moderate Regionally restricted euxassay_007074_22
TS23: ovary Strong Regionally restricted euxassay_007074_22
Specimen euxassay_007074_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_23
TS23: heart atrium Moderate Regionally restricted euxassay_007074_23
TS23: ovary Strong Regionally restricted euxassay_007074_23
Specimen euxassay_007074_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Strong Single cells euxassay_007074_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory