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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825860
Gene symbol: Lama5
Gene name: laminin, alpha 5
Probe: T36578
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 4B - Lama5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epithelium Present 4B Lama5
Specimen euxassay_011032_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_01
TS23: stomach Moderate Regionally restricted euxassay_011032_01
TS23: epidermis Moderate Regionally restricted euxassay_011032_01
TS23: cornea epithelium Weak Regionally restricted euxassay_011032_01
TS23: optic stalk Weak Regionally restricted euxassay_011032_01
Specimen euxassay_011032_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_02
TS23: stomach Moderate Regionally restricted euxassay_011032_02
TS23: epidermis Moderate Regionally restricted euxassay_011032_02
TS23: cornea epithelium Weak Regionally restricted euxassay_011032_02
Specimen euxassay_011032_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_03
TS23: lung Weak Regionally restricted euxassay_011032_03
TS23: stomach Moderate Regionally restricted euxassay_011032_03
TS23: epidermis Moderate Regionally restricted euxassay_011032_03
TS23: cornea epithelium Weak Regionally restricted euxassay_011032_03
Specimen euxassay_011032_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_011032_04
TS23: stomach Moderate Regionally restricted euxassay_011032_04
TS23: epidermis Moderate Regionally restricted euxassay_011032_04
TS23: cornea epithelium Weak Regionally restricted euxassay_011032_04
Specimen euxassay_011032_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_05
TS23: lung Strong Regionally restricted euxassay_011032_05
TS23: stomach Moderate Regionally restricted euxassay_011032_05
TS23: epidermis Moderate Regionally restricted euxassay_011032_05
TS23: vibrissa Moderate Regionally restricted euxassay_011032_05
TS23: cornea epithelium Moderate Regionally restricted euxassay_011032_05
TS23: urinary system Weak Regionally restricted euxassay_011032_05
TS23: mesonephros Present euxassay_011032_05
TS23: cochlea Moderate Regionally restricted euxassay_011032_05
TS23: saccule Moderate Regionally restricted euxassay_011032_05
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_05
Specimen euxassay_011032_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_06
TS23: lung Strong Regionally restricted euxassay_011032_06
TS23: stomach Moderate Regionally restricted euxassay_011032_06
TS23: vibrissa Moderate Regionally restricted euxassay_011032_06
TS23: epidermis Moderate Regionally restricted euxassay_011032_06
TS23: urinary system Weak Regionally restricted euxassay_011032_06
TS23: mesonephros Present euxassay_011032_06
TS23: cochlea Moderate Regionally restricted euxassay_011032_06
TS23: saccule Moderate Regionally restricted euxassay_011032_06
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_06
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_06
Specimen euxassay_011032_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_011032_07
TS23: lung Strong Regionally restricted euxassay_011032_07
TS23: stomach Moderate Regionally restricted euxassay_011032_07
TS23: epidermis Moderate Regionally restricted euxassay_011032_07
TS23: vibrissa Moderate Regionally restricted euxassay_011032_07
TS23: renal calyx Weak Regionally restricted euxassay_011032_07
TS23: cochlea Moderate Regionally restricted euxassay_011032_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_011032_07
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_011032_07
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_07
Specimen euxassay_011032_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_011032_08
TS23: lung Moderate Regionally restricted euxassay_011032_08
TS23: stomach Weak Regionally restricted euxassay_011032_08
TS23: midgut Weak Regionally restricted euxassay_011032_08
TS23: vibrissa Moderate Regionally restricted euxassay_011032_08
TS23: epidermis Moderate Regionally restricted euxassay_011032_08
TS23: renal calyx Weak Regionally restricted euxassay_011032_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_011032_08
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011032_08
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_08
Specimen euxassay_011032_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_011032_09
TS23: lung Strong Regionally restricted euxassay_011032_09
TS23: midgut Weak Regionally restricted euxassay_011032_09
TS23: stomach Weak Regionally restricted euxassay_011032_09
TS23: epidermis Moderate Regionally restricted euxassay_011032_09
TS23: vibrissa Moderate Regionally restricted euxassay_011032_09
TS23: renal calyx Moderate Regionally restricted euxassay_011032_09
TS23: renal pelvis Moderate Regionally restricted euxassay_011032_09
TS23: cochlea Moderate Regionally restricted euxassay_011032_09
TS23: oral epithelium Strong Regionally restricted euxassay_011032_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_011032_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_09
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_09
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_09
Specimen euxassay_011032_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_10
TS23: midgut Weak Regionally restricted euxassay_011032_10
TS23: epidermis Moderate Regionally restricted euxassay_011032_10
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_10
TS23: submandibular gland primordium Strong Regionally restricted euxassay_011032_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_10
TS23: thyroid gland Weak Regionally restricted euxassay_011032_10
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_10
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_10
Specimen euxassay_011032_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_11
TS23: midgut Weak Regionally restricted euxassay_011032_11
TS23: epidermis Moderate Regionally restricted euxassay_011032_11
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_11
TS23: sublingual gland primordium Strong Regionally restricted euxassay_011032_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_11
TS23: thyroid gland Weak Regionally restricted euxassay_011032_11
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_11
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_11
Specimen euxassay_011032_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_12
TS23: midgut Weak Regionally restricted euxassay_011032_12
TS23: esophagus Moderate Regionally restricted euxassay_011032_12
TS23: trachea Moderate Regionally restricted euxassay_011032_12
TS23: epidermis Moderate Regionally restricted euxassay_011032_12
TS23: oral epithelium Strong Regionally restricted euxassay_011032_12
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_12
TS23: thyroid gland Weak Regionally restricted euxassay_011032_12
TS23: pituitary gland Weak Regionally restricted euxassay_011032_12
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_12
Specimen euxassay_011032_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_13
TS23: hindgut Weak Regionally restricted euxassay_011032_13
TS23: midgut Weak Regionally restricted euxassay_011032_13
TS23: rectum Weak Regionally restricted euxassay_011032_13
TS23: bladder fundus Moderate Regionally restricted euxassay_011032_13
TS23: urethra Strong Regionally restricted euxassay_011032_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: nephric duct of male Moderate Regionally restricted euxassay_011032_13
TS23: esophagus Strong Regionally restricted euxassay_011032_13
TS23: larynx Strong Regionally restricted euxassay_011032_13
TS23: trachea Moderate Regionally restricted euxassay_011032_13
TS23: epidermis Moderate Regionally restricted euxassay_011032_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_011032_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_011032_13
TS23: oral epithelium Strong Regionally restricted euxassay_011032_13
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_13
TS23: naris Weak Regionally restricted euxassay_011032_13
TS23: pituitary gland Moderate Regionally restricted euxassay_011032_13
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_13
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_13
Specimen euxassay_011032_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_14
TS23: midgut Weak Regionally restricted euxassay_011032_14
TS23: rectum Weak Regionally restricted euxassay_011032_14
TS23: hindgut Weak Regionally restricted euxassay_011032_14
TS23: bladder fundus Moderate Regionally restricted euxassay_011032_14
TS23: nephric duct of male Moderate Regionally restricted euxassay_011032_14
TS23: urethra Moderate Regionally restricted euxassay_011032_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: larynx Moderate Regionally restricted euxassay_011032_14
TS23: epidermis Moderate Regionally restricted euxassay_011032_14
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_14
TS23: upper jaw incisor Moderate Regionally restricted euxassay_011032_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_011032_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_14
TS23: naris Weak Regionally restricted euxassay_011032_14
TS23: pituitary gland Moderate Regionally restricted euxassay_011032_14
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_14
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_14
Specimen euxassay_011032_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_15
TS23: midgut Weak Regionally restricted euxassay_011032_15
TS23: epidermis Moderate Regionally restricted euxassay_011032_15
TS23: oral epithelium Weak Regionally restricted euxassay_011032_15
TS23: naris Weak Regionally restricted euxassay_011032_15
TS23: thyroid gland Weak Regionally restricted euxassay_011032_15
TS23: pituitary gland Moderate Regionally restricted euxassay_011032_15
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_15
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_15
Specimen euxassay_011032_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_16
TS23: midgut Weak Regionally restricted euxassay_011032_16
TS23: epidermis Moderate Regionally restricted euxassay_011032_16
TS23: oral epithelium Weak Regionally restricted euxassay_011032_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_16
TS23: thyroid gland Weak Regionally restricted euxassay_011032_16
TS23: pituitary gland Weak Regionally restricted euxassay_011032_16
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_16
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_16
Specimen euxassay_011032_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_17
TS23: midgut Weak Regionally restricted euxassay_011032_17
TS23: epidermis Moderate Regionally restricted euxassay_011032_17
TS23: renal pelvis Moderate Regionally restricted euxassay_011032_17
TS23: renal calyx Moderate Regionally restricted euxassay_011032_17
TS23: cochlea Moderate Regionally restricted euxassay_011032_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_011032_17
TS23: oral epithelium Strong Regionally restricted euxassay_011032_17
TS23: lower jaw incisor Strong Regionally restricted euxassay_011032_17
TS23: sublingual gland primordium Strong Regionally restricted euxassay_011032_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_011032_17
TS23: naris Moderate Regionally restricted euxassay_011032_17
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_17
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_17
Specimen euxassay_011032_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_18
TS23: midgut Weak Regionally restricted euxassay_011032_18
TS23: epidermis Moderate Regionally restricted euxassay_011032_18
TS23: renal pelvis Moderate Regionally restricted euxassay_011032_18
TS23: renal calyx Moderate Regionally restricted euxassay_011032_18
TS23: cochlea Moderate Regionally restricted euxassay_011032_18
TS23: saccule Moderate Regionally restricted euxassay_011032_18
TS23: upper jaw incisor Moderate Regionally restricted euxassay_011032_18
TS23: lower jaw incisor Moderate Regionally restricted euxassay_011032_18
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_011032_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_011032_18
TS23: naris Moderate Regionally restricted euxassay_011032_18
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_18
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_18
Specimen euxassay_011032_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_011032_19
TS23: midgut Weak Regionally restricted euxassay_011032_19
TS23: epidermis Moderate Regionally restricted euxassay_011032_19
TS23: renal calyx Moderate Regionally restricted euxassay_011032_19
TS23: renal pelvis Moderate Regionally restricted euxassay_011032_19
TS23: cochlea Moderate Regionally restricted euxassay_011032_19
TS23: saccule Moderate Regionally restricted euxassay_011032_19
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_19
TS23: submandibular gland primordium Strong Regionally restricted euxassay_011032_19
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_19
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_19
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011032_19
Specimen euxassay_011032_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_011032_20
TS23: lung Strong Regionally restricted euxassay_011032_20
TS23: epidermis Moderate Regionally restricted euxassay_011032_20
TS23: renal calyx Moderate Regionally restricted euxassay_011032_20
TS23: cochlea Moderate Regionally restricted euxassay_011032_20
TS23: saccule Moderate Regionally restricted euxassay_011032_20
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_20
TS23: lower jaw molar Moderate Regionally restricted euxassay_011032_20
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011032_20
TS23: olfactory epithelium Weak Regionally restricted euxassay_011032_20
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011032_20
Specimen euxassay_011032_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_011032_21
TS23: lung Strong Regionally restricted euxassay_011032_21
TS23: epidermis Moderate Regionally restricted euxassay_011032_21
TS23: urinary system Weak Regionally restricted euxassay_011032_21
TS23: mesonephros Present euxassay_011032_21
TS23: renal calyx Weak Regionally restricted euxassay_011032_21
TS23: cochlea Moderate Regionally restricted euxassay_011032_21
TS23: saccule Moderate Regionally restricted euxassay_011032_21
TS23: oral epithelium Strong Regionally restricted euxassay_011032_21
TS23: lower jaw molar Strong Regionally restricted euxassay_011032_21
TS23: upper jaw molar Strong Regionally restricted euxassay_011032_21
Specimen euxassay_011032_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_011032_22
TS23: lung Strong Regionally restricted euxassay_011032_22
TS23: epidermis Moderate Regionally restricted euxassay_011032_22
TS23: vibrissa Moderate Regionally restricted euxassay_011032_22
TS23: urinary system Weak Regionally restricted euxassay_011032_22
TS23: mesonephros Present euxassay_011032_22
TS23: cochlea Moderate Regionally restricted euxassay_011032_22
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_22
Specimen euxassay_011032_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_23
TS23: lung Strong Regionally restricted euxassay_011032_23
TS23: vibrissa Moderate Regionally restricted euxassay_011032_23
TS23: epidermis Moderate Regionally restricted euxassay_011032_23
TS23: urinary system Weak Regionally restricted euxassay_011032_23
TS23: mesonephros Present euxassay_011032_23
TS23: oral epithelium Moderate Regionally restricted euxassay_011032_23
Specimen euxassay_011032_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_011032_24
TS23: lung Strong Regionally restricted euxassay_011032_24
TS23: epidermis Moderate Regionally restricted euxassay_011032_24
TS23: vibrissa Moderate Regionally restricted euxassay_011032_24
TS23: cornea epithelium Moderate Regionally restricted euxassay_011032_24
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory