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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827065
Gene symbol: Pax6
Gene name: paired box 6
Probe: MH454 probe 390
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_017942_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_01
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_01
Specimen euxassay_017942_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_02
TS23: lung Moderate Regionally restricted euxassay_017942_02
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_02
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_02
Specimen euxassay_017942_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_017942_03
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_03
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_03
Specimen euxassay_017942_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_017942_04
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_04
Specimen euxassay_017942_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_017942_05
TS23: lung Weak Regionally restricted euxassay_017942_05
TS23: ventral grey horn Strong Single cells euxassay_017942_05
TS23: intermediate grey horn Strong Single cells euxassay_017942_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_05
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_05
Specimen euxassay_017942_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_017942_06
TS23: lung Moderate Regionally restricted euxassay_017942_06
TS23: ventral grey horn Strong Single cells euxassay_017942_06
TS23: intermediate grey horn Strong Single cells euxassay_017942_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_06
Specimen euxassay_017942_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_017942_07
TS23: lung Moderate Regionally restricted euxassay_017942_07
TS23: pericardium Moderate Spotted euxassay_017942_07
TS23: ventral grey horn Strong Single cells euxassay_017942_07
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_07
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_07
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_017942_07
Specimen euxassay_017942_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_017942_08
TS23: vomeronasal organ Weak Regionally restricted euxassay_017942_08
TS23: lung Weak Regionally restricted euxassay_017942_08
TS23: pericardium Moderate Spotted euxassay_017942_08
TS23: ventral grey horn Strong Single cells euxassay_017942_08
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_08
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_017942_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_08
TS23: pons ventricular layer Weak Regionally restricted euxassay_017942_08
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_08
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_017942_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_08
Specimen euxassay_017942_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Spotted euxassay_017942_09
TS23: vomeronasal organ Weak Regionally restricted euxassay_017942_09
TS23: lung Weak Regionally restricted euxassay_017942_09
TS23: pericardium Moderate Spotted euxassay_017942_09
TS23: pituitary gland Moderate Regionally restricted euxassay_017942_09
TS23: ventral grey horn Strong Single cells euxassay_017942_09
TS23: intermediate grey horn Strong Single cells euxassay_017942_09
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017942_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_017942_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_017942_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_017942_09
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_09
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_09
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017942_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_09
Specimen euxassay_017942_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Spotted euxassay_017942_10
TS23: pericardium Moderate Spotted euxassay_017942_10
TS23: pituitary gland Moderate Regionally restricted euxassay_017942_10
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_10
TS23: intermediate grey horn Strong Single cells euxassay_017942_10
TS23: ventral grey horn Strong Single cells euxassay_017942_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_017942_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_10
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_10
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_10
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017942_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_10
Specimen euxassay_017942_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vomeronasal organ Moderate Spotted euxassay_017942_11
TS23: olfactory epithelium Moderate Spotted euxassay_017942_11
TS23: pericardium Moderate Spotted euxassay_017942_11
TS23: pituitary gland Moderate Regionally restricted euxassay_017942_11
TS23: pancreas Strong Regionally restricted euxassay_017942_11
TS23: ventral grey horn Strong Single cells euxassay_017942_11
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_11
TS23: intermediate grey horn Strong Single cells euxassay_017942_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_017942_11
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017942_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017942_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_11
Specimen euxassay_017942_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Spotted euxassay_017942_12
TS23: vomeronasal organ Moderate Spotted euxassay_017942_12
TS23: lung Weak Regionally restricted euxassay_017942_12
TS23: pericardium Moderate Spotted euxassay_017942_12
TS23: pituitary gland Weak Regionally restricted euxassay_017942_12
TS23: pancreas Strong Regionally restricted euxassay_017942_12
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_12
TS23: ventral grey horn Strong Single cells euxassay_017942_12
TS23: intermediate grey horn Strong Single cells euxassay_017942_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_017942_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_12
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_12
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_017942_12
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017942_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_12
Specimen euxassay_017942_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_017942_13
TS23: lung Weak Regionally restricted euxassay_017942_13
TS23: pericardium Moderate Spotted euxassay_017942_13
TS23: pituitary gland Weak Regionally restricted euxassay_017942_13
TS23: ventral grey horn Strong Single cells euxassay_017942_13
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_13
TS23: intermediate grey horn Strong Single cells euxassay_017942_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017942_13
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_017942_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_13
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_017942_13
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017942_13
Specimen euxassay_017942_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_017942_14
TS23: lung Moderate Regionally restricted euxassay_017942_14
TS23: pericardium Moderate Spotted euxassay_017942_14
TS23: pituitary gland Weak Regionally restricted euxassay_017942_14
TS23: ventral grey horn Strong Single cells euxassay_017942_14
TS23: spinal cord ventricular layer Strong Single cells euxassay_017942_14
TS23: intermediate grey horn Strong Single cells euxassay_017942_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_017942_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_017942_14
Specimen euxassay_017942_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_017942_15
TS23: lung Weak Regionally restricted euxassay_017942_15
TS23: pericardium Moderate Spotted euxassay_017942_15
TS23: pituitary gland Weak Regionally restricted euxassay_017942_15
TS23: ventral grey horn Strong Single cells euxassay_017942_15
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_017942_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_15
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_15
Specimen euxassay_017942_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_017942_16
TS23: lung Weak Regionally restricted euxassay_017942_16
TS23: pericardium Moderate Spotted euxassay_017942_16
TS23: ventral grey horn Strong Single cells euxassay_017942_16
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_017942_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_16
Specimen euxassay_017942_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_017942_17
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_17
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_17
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_17
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_017942_17
Specimen euxassay_017942_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_017942_18
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_017942_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_017942_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_017942_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_18
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_18
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_017942_18
Specimen euxassay_017942_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_19
TS23: pons ventricular layer Moderate Regionally restricted euxassay_017942_19
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_19
Specimen euxassay_017942_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_20
TS23: neural retina Strong Regionally restricted euxassay_017942_20
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_20
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_20
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_20
Specimen euxassay_017942_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_21
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_21
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_21
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_21
Specimen euxassay_017942_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_22
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_22
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_22
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_22
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_017942_22
Specimen euxassay_017942_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_23
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_23
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_017942_23
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_017942_23
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_23
Specimen euxassay_017942_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_017942_24
TS23: cornea epithelium Strong Regionally restricted euxassay_017942_24
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_017942_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
06/12/2024
MGI 6.13 		The Jackson Laboratory