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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827913
Gene symbol: Scrt2
Gene name: scratch family zinc finger 2
Probe: T38745
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016519_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016519_03
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_016519_03
Specimen euxassay_016519_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016519_04
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_016519_04
Specimen euxassay_016519_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016519_05
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_016519_05
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_05
TS23: facial ganglion Moderate Regionally restricted euxassay_016519_05
Specimen euxassay_016519_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016519_06
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_016519_06
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_06
TS23: facial ganglion Moderate Regionally restricted euxassay_016519_06
Specimen euxassay_016519_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_016519_07
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_07
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_016519_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_016519_07
Specimen euxassay_016519_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_08
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_016519_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_016519_08
Specimen euxassay_016519_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_09
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016519_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_09
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016519_09
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_09
TS23: spinal cord mantle layer Weak Regionally restricted euxassay_016519_09
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_016519_09
TS23: trigeminal ganglion Weak Regionally restricted euxassay_016519_09
Specimen euxassay_016519_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_10
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016519_10
TS23: trigeminal ganglion Weak Regionally restricted euxassay_016519_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_016519_10
Specimen euxassay_016519_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_11
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_11
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_11
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016519_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_016519_11
Specimen euxassay_016519_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_12
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_12
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_12
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016519_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_12
Specimen euxassay_016519_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_016519_13
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_13
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_13
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_13
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_13
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_13
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016519_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_13
Specimen euxassay_016519_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_016519_14
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_14
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_14
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016519_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_14
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_14
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_14
TS23: spinal cord mantle layer Weak Regionally restricted euxassay_016519_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_14
Specimen euxassay_016519_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_15
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_15
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_15
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_15
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016519_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_016519_15
Specimen euxassay_016519_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_16
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016519_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_16
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_016519_16
Specimen euxassay_016519_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_016519_17
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_17
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_17
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_17
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_17
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016519_17
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016519_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016519_17
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_016519_17
Specimen euxassay_016519_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_016519_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_18
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_18
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_18
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_18
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_016519_18
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_016519_18
Specimen euxassay_016519_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_19
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_016519_19
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_19
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_19
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_19
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016519_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_19
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_016519_19
Specimen euxassay_016519_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016519_20
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_20
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016519_20
TS23: pons mantle layer Weak Regionally restricted euxassay_016519_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_20
TS23: facial ganglion Moderate Regionally restricted euxassay_016519_20
Specimen euxassay_016519_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016519_21
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016519_21
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_016519_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_21
TS23: facial ganglion Moderate Regionally restricted euxassay_016519_21
Specimen euxassay_016519_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016519_22
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_016519_22
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_22
Specimen euxassay_016519_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016519_23
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_016519_23
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_016519_23
Specimen euxassay_016519_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016519_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016519_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
09/17/2024
MGI 6.24 		The Jackson Laboratory