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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828261
Gene symbol: Slc6a15
Gene name: solute carrier family 6 (neurotransmitter transporter), member 15
Probe: T37040
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex Weak
TS23: midbrain Weak
TS23: pons Weak
TS23: medulla oblongata Weak
TS23: choroid plexus Strong
Specimen euxassay_012147_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012147_02
TS23: stomach Moderate Spotted euxassay_012147_02
Specimen euxassay_012147_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012147_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012147_03
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_03
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_03
TS23: stomach Moderate Spotted euxassay_012147_03
Specimen euxassay_012147_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012147_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_04
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_04
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_04
TS23: stomach Moderate Spotted euxassay_012147_04
Specimen euxassay_012147_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_05
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012147_05
TS23: facial ganglion Moderate Regionally restricted euxassay_012147_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_05
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_05
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_05
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_05
TS23: stomach Moderate Spotted euxassay_012147_05
Specimen euxassay_012147_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012147_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_06
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_06
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_06
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_06
TS23: stomach Moderate Spotted euxassay_012147_06
Specimen euxassay_012147_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_07
TS23: vagus ganglion Moderate Regionally restricted euxassay_012147_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012147_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_07
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_07
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_07
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_07
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_07
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_07
TS23: choroid invagination Strong Regionally restricted euxassay_012147_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_07
TS23: stomach Moderate Spotted euxassay_012147_07
Specimen euxassay_012147_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_08
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_08
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_08
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_08
TS23: choroid invagination Strong Regionally restricted euxassay_012147_08
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_08
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_08
TS23: stomach Moderate Spotted euxassay_012147_08
Specimen euxassay_012147_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_09
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_09
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_09
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_09
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_09
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_09
TS23: choroid invagination Strong Regionally restricted euxassay_012147_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_09
TS23: ventral grey horn Weak Regionally restricted euxassay_012147_09
TS23: stomach Moderate Spotted euxassay_012147_09
Specimen euxassay_012147_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_10
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_10
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_10
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_10
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_10
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_10
TS23: choroid invagination Strong Regionally restricted euxassay_012147_10
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_10
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_10
TS23: ventral grey horn Weak Regionally restricted euxassay_012147_10
TS23: midgut Moderate Spotted euxassay_012147_10
Specimen euxassay_012147_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_11
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_11
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_11
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_11
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_11
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_11
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_11
TS23: choroid invagination Strong Regionally restricted euxassay_012147_11
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_11
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012147_11
TS23: anterior naris epithelium Moderate Regionally restricted euxassay_012147_11
TS23: external naris epithelium Moderate Regionally restricted euxassay_012147_11
TS23: ventral grey horn Weak Regionally restricted euxassay_012147_11
TS23: midgut Moderate Spotted euxassay_012147_11
Specimen euxassay_012147_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_12
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_12
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_12
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_12
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_12
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_12
TS23: choroid invagination Strong Regionally restricted euxassay_012147_12
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_12
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_12
TS23: anterior naris epithelium Moderate Regionally restricted euxassay_012147_12
TS23: midgut Moderate Spotted euxassay_012147_12
Specimen euxassay_012147_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_13
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_13
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_13
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_13
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_13
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_13
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_13
TS23: diencephalon roof plate Strong Regionally restricted euxassay_012147_13
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_13
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_13
TS23: ventral grey horn Weak Regionally restricted euxassay_012147_13
TS23: midgut Moderate Spotted euxassay_012147_13
Specimen euxassay_012147_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_14
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_14
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_14
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_14
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_14
TS23: diencephalon roof plate Strong Regionally restricted euxassay_012147_14
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_14
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_14
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_14
TS23: anterior naris epithelium Strong Regionally restricted euxassay_012147_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012147_14
TS23: ventral grey horn Weak Regionally restricted euxassay_012147_14
TS23: midgut Moderate Spotted euxassay_012147_14
Specimen euxassay_012147_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_15
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_15
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_15
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_15
TS23: choroid invagination Strong Regionally restricted euxassay_012147_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_15
Specimen euxassay_012147_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_16
TS23: vagus ganglion Moderate Regionally restricted euxassay_012147_16
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_16
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_16
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_16
TS23: choroid invagination Strong Regionally restricted euxassay_012147_16
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_16
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012147_16
Specimen euxassay_012147_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_17
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012147_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_17
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_17
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_17
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_17
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_17
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012147_17
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_17
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_17
TS23: choroid invagination Strong Regionally restricted euxassay_012147_17
Specimen euxassay_012147_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_18
TS23: facial ganglion Moderate Regionally restricted euxassay_012147_18
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_18
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_18
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_18
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_18
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012147_18
TS23: choroid invagination Strong Regionally restricted euxassay_012147_18
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_18
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_18
Specimen euxassay_012147_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012147_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012147_19
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012147_19
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_19
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012147_19
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_19
TS23: pons mantle layer Weak Regionally restricted euxassay_012147_19
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_19
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_19
TS23: choroid invagination Strong Regionally restricted euxassay_012147_19
Specimen euxassay_012147_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012147_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_20
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012147_20
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_20
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_20
Specimen euxassay_012147_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_21
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012147_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_21
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_21
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_012147_21
Specimen euxassay_012147_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012147_22
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_22
Specimen euxassay_012147_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012147_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
06/12/2024
MGI 6.13 		The Jackson Laboratory