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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828268
Gene symbol: Slc6a6
Gene name: solute carrier family 6 (neurotransmitter transporter, taurine), member 6
Probe: MGC clone 18313
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: blood vessel Strong Regionally restricted Expression is present in the vasculature of the brain.
TS23: brain meninges Strong

Specimen euxassay_004447_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_01
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_01

Specimen euxassay_004447_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_02
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_02

Specimen euxassay_004447_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_03
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_03
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_03

Specimen euxassay_004447_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_04
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_04
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_04
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_04
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_04

Specimen euxassay_004447_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_05
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_05
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_05
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_05

Specimen euxassay_004447_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_06
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_06
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_06
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_06

Specimen euxassay_004447_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_07
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_07
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_07
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_07
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_004447_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_004447_07

Specimen euxassay_004447_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_08
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_08
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_08
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_004447_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_004447_08

Specimen euxassay_004447_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_09
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_09
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_09
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_09
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_09
TS23: upper jaw molar Moderate Regionally restricted euxassay_004447_09
TS23: lower jaw molar Moderate Regionally restricted euxassay_004447_09

Specimen euxassay_004447_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_10
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_10
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_10
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_10
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_10
TS23: nose Moderate Regionally restricted euxassay_004447_10

Specimen euxassay_004447_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_11
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_11
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_11
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_11
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_11
TS23: nose Moderate Regionally restricted euxassay_004447_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004447_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004447_11

Specimen euxassay_004447_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_12
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_12
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_12
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_12
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_12
TS23: nose Moderate Regionally restricted euxassay_004447_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004447_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004447_12

Specimen euxassay_004447_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_13
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_13
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_13
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_13
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_13
TS23: nose Moderate Regionally restricted euxassay_004447_13

Specimen euxassay_004447_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_14
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_14
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_14
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_14
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_14
TS23: nose Moderate Regionally restricted euxassay_004447_14

Specimen euxassay_004447_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_15
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_15
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_15
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_15
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_15
TS23: nose Moderate Regionally restricted euxassay_004447_15

Specimen euxassay_004447_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_16
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_16
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_16
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_004447_16
TS23: nose Moderate Regionally restricted euxassay_004447_16

Specimen euxassay_004447_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_17
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_17
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_17
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_17
TS23: nose Strong Regionally restricted euxassay_004447_17
TS23: lower jaw incisor Strong Regionally restricted euxassay_004447_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_004447_17

Specimen euxassay_004447_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_18
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_18
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_18
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_18
TS23: nose Moderate Regionally restricted euxassay_004447_18

Specimen euxassay_004447_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_19
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_19
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_19
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_19
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_19
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_19
TS23: nose Moderate Regionally restricted euxassay_004447_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_004447_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_004447_19

Specimen euxassay_004447_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_20
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_20
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_20
TS23: diencephalon meninges Strong Regionally restricted euxassay_004447_20
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_20
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004447_20
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004447_20
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_20
TS23: lower jaw molar Moderate Regionally restricted euxassay_004447_20
TS23: upper jaw molar Moderate Regionally restricted euxassay_004447_20

Specimen euxassay_004447_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_21
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_21
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_21
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_21
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_21
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_21
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_21

Specimen euxassay_004447_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_22
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_22
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_22
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_22
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004447_22
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004447_22
TS23: pons mantle layer Moderate Regionally restricted euxassay_004447_22

Specimen euxassay_004447_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_23
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_23
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_23
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_23

Specimen euxassay_004447_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_004447_24
TS23: midbrain meninges Strong Regionally restricted euxassay_004447_24
TS23: hindbrain meninges Strong Regionally restricted euxassay_004447_24
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_004447_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004447_24


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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory