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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828392
Gene symbol: Sox4
Gene name: SRY (sex determining region Y)-box 4
Probe: T55187
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019583_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019583_01
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_01
Specimen euxassay_019583_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019583_02
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_02
Specimen euxassay_019583_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019583_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_03
Specimen euxassay_019583_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_04
TS23: lung Moderate Regionally restricted euxassay_019583_04
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_04
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019583_04
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019583_04
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_04
Specimen euxassay_019583_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_05
TS23: lung Strong Regionally restricted euxassay_019583_05
TS23: upper jaw molar Moderate Regionally restricted euxassay_019583_05
TS23: lower jaw molar Moderate Regionally restricted euxassay_019583_05
TS23: testis Moderate Regionally restricted euxassay_019583_05
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019583_05
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019583_05
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_05
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019583_05
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_05
Specimen euxassay_019583_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_06
TS23: lung Strong Regionally restricted euxassay_019583_06
TS23: upper jaw molar Moderate Regionally restricted euxassay_019583_06
TS23: lower jaw molar Moderate Regionally restricted euxassay_019583_06
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_06
TS23: testis Weak Regionally restricted euxassay_019583_06
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019583_06
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019583_06
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_06
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_06
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_06 mammillary region
Specimen euxassay_019583_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_07
TS23: testis Weak Regionally restricted euxassay_019583_07
TS23: metanephros Weak Regionally restricted euxassay_019583_07
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019583_07
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019583_07
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_07
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_07
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_07 mammillary region
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019583_07 facial motor nucleus
Specimen euxassay_019583_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_08
TS23: cervical ganglion Strong Regionally restricted euxassay_019583_08
TS23: testis Weak Regionally restricted euxassay_019583_08
TS23: metanephros Weak Regionally restricted euxassay_019583_08
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_08 mammillary region
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019583_08 facial motor nucleus
Specimen euxassay_019583_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_09
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019583_09
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019583_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_09
TS23: metanephros Weak Regionally restricted euxassay_019583_09
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_09 mammillary region
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019583_09 facial motor nucleus
Specimen euxassay_019583_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019583_10
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019583_10
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_019583_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_10
TS23: metanephros Weak Regionally restricted euxassay_019583_10
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_10
TS23: dorsal grey horn Weak Regionally restricted euxassay_019583_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_10 mammillary region
Specimen euxassay_019583_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019583_11
TS23: heart valve Moderate Regionally restricted euxassay_019583_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_11
TS23: metanephros Weak Regionally restricted euxassay_019583_11
TS23: tail mesenchyme Moderate Regionally restricted euxassay_019583_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_11
Specimen euxassay_019583_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019583_12
TS23: heart valve Moderate Regionally restricted euxassay_019583_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_12
TS23: tail mesenchyme Weak Regionally restricted euxassay_019583_12
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_12
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_12 mammillary region
Specimen euxassay_019583_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: heart valve Moderate Regionally restricted euxassay_019583_13
TS23: esophagus Strong Regionally restricted euxassay_019583_13
TS23: trachea Strong Regionally restricted euxassay_019583_13
TS23: tail mesenchyme Weak Regionally restricted euxassay_019583_13
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_13
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_13 mammillary region
Specimen euxassay_019583_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_019583_14
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019583_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019583_14
TS23: heart valve Moderate Regionally restricted euxassay_019583_14
TS23: trachea Strong Regionally restricted euxassay_019583_14
TS23: tail mesenchyme Weak Regionally restricted euxassay_019583_14
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_14
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_14 mammillary region
Specimen euxassay_019583_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_019583_15
TS23: upper jaw incisor Weak Regionally restricted euxassay_019583_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_019583_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_019583_15
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_15
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_15 mammillary region
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019583_15 facial motor nucleus
Specimen euxassay_019583_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_019583_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_16
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_019583_16
TS23: cervical ganglion Strong Regionally restricted euxassay_019583_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_019583_16
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_16
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019583_16 mammillary region
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019583_16 facial motor nucleus
Specimen euxassay_019583_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_17
TS23: lung Moderate Regionally restricted euxassay_019583_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_019583_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_019583_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_17
TS23: cervical ganglion Strong Regionally restricted euxassay_019583_17
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_019583_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_17
TS23: metanephros Weak Regionally restricted euxassay_019583_17
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_17
TS23: dorsal grey horn Strong Regionally restricted euxassay_019583_17
Specimen euxassay_019583_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_18
TS23: lung Moderate Regionally restricted euxassay_019583_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_019583_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_019583_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019583_18
TS23: metanephros Weak Regionally restricted euxassay_019583_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_18
Specimen euxassay_019583_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_19
TS23: lung Moderate Regionally restricted euxassay_019583_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_019583_19
TS23: metanephros Moderate Regionally restricted euxassay_019583_19
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019583_19
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_19
Specimen euxassay_019583_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_019583_20
TS23: lung Moderate Regionally restricted euxassay_019583_20
TS23: testis Weak Regionally restricted euxassay_019583_20
TS23: metanephros Moderate Regionally restricted euxassay_019583_20
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019583_20
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019583_20
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_20
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019583_20
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_20
Specimen euxassay_019583_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019583_21
TS23: vibrissa Strong Regionally restricted euxassay_019583_21
TS23: lung Strong Regionally restricted euxassay_019583_21
TS23: testis Weak Regionally restricted euxassay_019583_21
TS23: metanephros Moderate Regionally restricted euxassay_019583_21
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019583_21
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019583_21
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019583_21
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019583_21
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_21
Specimen euxassay_019583_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019583_22
TS23: lung Strong Regionally restricted euxassay_019583_22
TS23: testis Weak Regionally restricted euxassay_019583_22
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019583_22
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_019583_22
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
09/17/2024
MGI 6.24 		The Jackson Laboratory