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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421455
Gene symbol: Syne1
Gene name: spectrin repeat containing, nuclear envelope 1
Probe: MH1249 probe 1023
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH1249; Specimen C1547: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Moderate Regionally restricted Embryo_C1547_6_6B
TS22: central nervous system Moderate Regionally restricted Embryo_C1547_6_6B
TS22: telencephalon Moderate Regionally restricted Embryo_C1547_6_6B
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1547_6_6B
TS22: neocortex Absent
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1547_6_6B
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1547_6_4B
TS22: piriform cortex Moderate Regionally restricted Embryo_C1547_6_6B
TS22: hippocampus Absent
TS22: basal ganglia Weak Regionally restricted Embryo_C1547_6_6A
TS22: corpus striatum Weak Regionally restricted Embryo_C1547_6_6A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1547_6_6A
TS22: amygdala Weak Regionally restricted Embryo_C1547_6_1C
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1547_6_4A
TS22: thalamus Weak Regionally restricted Embryo_C1547_6_4A
TS22: hypothalamus Weak Regionally restricted Embryo_C1547_6_4A
TS22: midbrain Moderate Regionally restricted Embryo_C1547_6_4B
TS22: pretectum Moderate Regionally restricted Embryo_C1547_6_4C
TS22: superior colliculus Absent
TS22: inferior colliculus Weak Regionally restricted Embryo_C1547_6_4B
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1547_6_4B
TS22: hindbrain Moderate Regionally restricted Embryo_C1547_6_3B
TS22: cerebellum Absent
TS22: pons Moderate Regionally restricted Embryo_C1547_6_3B
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1547_6_3B
TS22: spinal cord Moderate Regionally restricted Embryo_C1547_6_4C
TS22: choroid plexus Weak Regionally restricted Embryo_C1547_6_4B
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1547_6_3A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1547_6_2A
TS22: dorsal root ganglion Moderate Scattered Embryo_C1547_6_3A
TS22: eye Absent
TS22: retina Absent
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Weak Regionally restricted Embryo_C1547_6_5A
TS22: inner ear Weak Regionally restricted Embryo_C1547_6_5A
TS22: cochlea Weak Regionally restricted Embryo_C1547_6_5A
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1547_6_4C Expression was strong in the digestive system.
TS22: intestine Absent
TS22: salivary gland Absent
TS22: tongue Absent
TS22: tooth Strong Regionally restricted Embryo_C1547_6_2C
TS22: palatal shelf Strong Regionally restricted Embryo_C1547_6_4C
TS22: esophagus Absent
TS22: stomach Weak Regionally restricted Embryo_C1547_6_6A
TS22: liver Moderate Scattered Embryo_C1547_6_6A
TS22: respiratory system Absent
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Absent
TS22: urinary system Weak Regionally restricted Embryo_C1547_6_3B Expression was weak in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_C1547_6_3B
TS22: genital tubercle Weak Regionally restricted Embryo_C1547_6_3B
TS22: gonad Absent
TS22: gland Absent Expression was not detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C1547_6_1A Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Moderate Regionally restricted Embryo_C1547_6_6A Expression was detected in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1547_6_1A
TS22: tail Weak Regionally restricted Embryo_C1547_6_3C
TS22: forelimb Weak Regionally restricted Embryo_C1547_6_6B
TS22: hindlimb Weak Regionally restricted Embryo_C1547_6_6C
TS22: integumental system Moderate Regionally restricted Embryo_C1547_6_6B
TS22: skin Moderate Regionally restricted Embryo_C1547_6_6B
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory