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Gene Expression Data
Assay Details
Assay
Reference: J:42031 Bonnelye E, et al., Expression of the estrogen-related receptor 1 (ERR-1) orphan receptor during mouse development. Mech Dev. 1997 Jul;65(1-2):71-85
Assay type: RNA in situ
MGI Accession ID: MGI:5444630
Gene symbol: Esrra
Gene name: estrogen related receptor, alpha
Probe: Err1 cDNA1
Probe preparation: Antisense labelled with S35 RNA
Results
Specimen 1B: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: primitive ventricle Present 1B
TS13: trophectoderm Present 1B
TS13: yolk sac mesenchyme Present 1B
TS13: neural fold Weak Regionally restricted 1B Expression was detected within the neural groove cells.

Specimen 2A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: common atrial chamber cardiac muscle Present 2A
TS17: primitive ventricle Present Regionally restricted 2A Expression was detected in the trabeculations of the common ventricular chamber and in the interventricular septum.
TS17: primitive ventricle cardiac muscle Present Regionally restricted 2A Expression was detected in the muscular part (non-trabeculated) of the interventricular septum.
TS17: dorsal mesocardium Present 2A
TS17: endocardial cushion Absent 2A The endocardial cushion associated with the wall of the atrio-ventricular canal is not labelled.

Specimen 2B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: limb musculature Present Regionally restricted 2B Expression was detected in the premuscular mass.
TS21: epidermis Present Regionally restricted 2B Expression was detected in limb epidermis.

Specimen 2C: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: forelimb epidermis Present 2C
TS25: forelimb musculature Present 2C

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: heart atrium Present At E13.5, labelling displays the same basic characteristics as observed at E10.5.
TS21: heart ventricle Present At E13.5, labelling displays the same basic characteristics as observed at E10.5.

Specimen not shown: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: heart atrium Present Regionally restricted Expression was detected in the atrial wall.
TS23: ventricle cardiac muscle Present Regionally restricted Expression was detected in the trabecules and in the wall of the myocardial ventricles.

Specimen not shown: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: heart atrium Present Regionally restricted Expression was detected in the wall of the atrium.
TS25: ventricle cardiac muscle Present Regionally restricted Expression was detected in the trabecules and in the wall of the myocardial ventricles.

Specimen 3A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: dorsal root ganglion Present 3A
TS17: future spinal cord Present 3A
TS17: heart Present 3A
TS17: brain Present 3A Expression was detected at a high level in the cephalic neuroepithelium.
TS17: central nervous system Present Graded 3A All along the anteroposterior axis, expression was noted in a dorso-ventral gradient in the neural tube.

Specimen 3B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 3B Expression was detected in differentiating cells of the intermediate zone in the ventral and peripheral parts of the neural tube and weakly in the ventricular zone.
TS17: dorsal root ganglion Present 3B

Specimen 3C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Present 3C

Specimen 3D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hypothalamus Present 3D
TS21: thalamus Present 3D
TS21: midbrain Present Regionally restricted 3D Labelling is much more in the intermediate zone of the midbrain than in the mantle.

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: midbrain Present Regionally restricted Expression was periventricular in the mesencephalon.
TS21: adenohypophysis Present
TS21: cerebral cortex Present Regionally restricted Expression was detected in the neopallial cortex.
TS21: cerebellum Present Regionally restricted Expression was detected in the cerebellar peduncle.
TS21: pons Present Regionally restricted Expression was detected in the basal region of the pons.
TS21: medulla oblongata basal plate Present Regionally restricted Expression was detected in the medullary raphe.
TS21: esophagus Present Regionally restricted Expression was detected in the entrance of the esophagus.
TS21: stomach Present Regionally restricted Expression was detected in the mucosal lining of the stomach.
TS21: liver Weak
TS21: lung Weak
TS21: urinary system Present Regionally restricted Expression was detected in the definitive and vesical region of the urogenital system.
TS21: gonad Absent

Specimen 3F: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: corpus striatum Present Regionally restricted 3F Expression was detected in median and lateral corpus striatum. The caudate nucleus and putamen were also labelled.

Specimen 3G: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: trigeminal ganglion Present 3G
TS21: vestibulo-cochlear ganglion Present 3G

Specimen 3H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cerebral cortex intermediate zone Present 3H

Specimen 3I: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Regionally restricted 3I Expression was detected in the rostral extension of the primitive cerebellum.

Specimen 3J: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Weak 3J Expression was detected in the periventricular region of the cerebral trunk but its level decreases dramatically at this stage.

Specimen not shown: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: accessory nerve Present
TS23: adenohypophysis Present
TS23: anal canal Present
TS23: choroid plexus Present
TS23: cochlear ganglion Present
TS23: glossopharyngeal ganglion Present
TS23: gut Present
TS23: larynx aditus Present
TS23: mammary gland primordium Present
TS23: oral cavity Present
TS23: spinal cord Present
TS23: thyroid gland Present
TS23: trigeminal ganglion Present
TS23: lung Ambiguous Relative to E13.5, the thymic rudiment and lung are less labelled.
TS23: thymus primordium Ambiguous Relative to E13.5, the thymic rudiment and lung are less labelled.
TS23: esophagus epithelium Weak

Specimen 3K: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: spinal cord Present 3K All the spinal cord is labelled, but the axons which emerge from the spinal cord were not labelled.
TS25: cerebellum Present Regionally restricted 3K Expression was detected in the cerebellar peduncle.
TS25: pons Present 3K

Specimen 4A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Present 4A
TS23: vomeronasal organ Present 4A
TS23: cerebral cortex Present Regionally restricted 4A Expression was detected in the neopallial cortex.

Specimen 4D: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: epidermis Present Regionally restricted 4D Expression was detected in differentiating cells of the suprabasal layer immediately above the basal cell layer and not in the proliferating cells of the Malpighian layer.

Specimen not shown: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: vagus ganglion Present

Specimen 5A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: vomeronasal organ Present Regionally restricted 5A Expression was detected in the pharyngeal wall of the vomeronasal organ.

Specimen 5B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: thymus primordium Present 5B Expression was detected in the lobes of the thymic rudiment.

Specimen 5C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: intestine epithelium Present 5C

Specimen 5E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: urogenital sinus Present Regionally restricted 5E Expression was detected in the internal epithelium of the urogenital sinus.

Specimen 6A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: mammary gland primordium epithelium Present 6A

Specimen Table 1 E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: corpus striatum Strong Regionally restricted Strong expression was noted in the lateral and median corpus striatum. Moderate expression was noted in the caudate/putamen.
TS21: cerebral cortex Strong Regionally restricted Expression was detected in the roof of the neopallial cortex.
TS21: accessory nerve Moderate
TS21: choroid plexus Moderate
TS21: telencephalon dura mater Moderate Regionally restricted Expression was detected in the falx cerebri.
TS21: telencephalon Strong Regionally restricted Expression was detected in the wall of the telencephalon.
TS21: alar columns Strong
TS21: cochlear ganglion Strong
TS21: crus commune Strong
TS21: external auditory meatus Strong
TS21: glossopharyngeal ganglion Strong
TS21: hypothalamus Strong
TS21: medulla oblongata alar plate Strong
TS21: medulla oblongata mantle layer Strong
TS21: olfactory epithelium Strong
TS21: semicircular canal Strong
TS21: superior cervical ganglion Strong
TS21: thalamus Strong
TS21: trigeminal ganglion Strong
TS21: vagus ganglion Strong
TS21: vestibular ganglion Strong
TS21: metencephalon Strong Regionally restricted Expression was detected in the rhombic lip.
TS21: pons Strong Regionally restricted Expression was detected in the tegmentum of pons
TS21: medulla oblongata Moderate Regionally restricted Expression was detected in the medullary raphe.
TS21: spinal cord Strong Regionally restricted Expression was detected in the fundamental layer (motor neurons) of the spinal cord.

Specimen Table 1 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Moderate Regionally restricted Expression was detected in the roof of the neopallial cortex.
TS23: choroid plexus Weak
TS23: medulla oblongata mantle layer Weak
TS23: vagus ganglion Weak
TS23: telencephalon Weak Regionally restricted Expression was detected in the wall of the telencephalon.
TS23: pons Weak Regionally restricted Expression was detected in the tegmentum of pons.
TS23: medulla oblongata Weak Regionally restricted Expression was detected in the medullary raphe.
TS23: alar columns Moderate
TS23: cochlear ganglion Moderate
TS23: glossopharyngeal ganglion Moderate
TS23: olfactory epithelium Moderate
TS23: trigeminal ganglion Moderate
TS23: vestibular ganglion Moderate
TS23: spinal cord Moderate Regionally restricted Expression was detected in the fundamental layer (motor neurons) of the spinal cord.

Specimen Table 1 E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: telencephalon Weak Regionally restricted Expression was detected in the wall of the telencephalon.
TS25: pons Weak Regionally restricted Expression was detected in the tegmentum of pons.
TS25: alar columns Moderate
TS25: spinal cord Moderate Regionally restricted Expression was detected in the fundamental layer (motor neurons) of the spinal cord.
TS25: trigeminal ganglion Weak
TS25: vagus ganglion Weak


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory