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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5539265
Gene symbol: Sox9
Gene name: SRY (sex determining region Y)-box 9
Probe: MTF#510
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:5547: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureteric tip Present GUDMAP:5547
TS23: ureteric trunk Absent GUDMAP:5547
TS23: renal interstitium Absent GUDMAP:5547
TS23: cap mesenchyme Absent GUDMAP:5547
TS23: early tubule Absent GUDMAP:5547
TS23: late tubule Absent GUDMAP:5547
TS23: renal vasculature Absent GUDMAP:5547
TS23: ureter Absent GUDMAP:5547
TS23: urethra of female Present GUDMAP:5547
TS23: bladder Absent GUDMAP:5547
TS23: ovary Absent GUDMAP:5547
TS23: female associated reproductive structure Present GUDMAP:5547
TS23: pelvic ganglion Present GUDMAP:5547
Specimen GUDMAP:12833: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureteric tip Present GUDMAP:12833
TS23: ureteric trunk Ambiguous GUDMAP:12833
TS23: renal interstitium Absent GUDMAP:12833
TS23: cap mesenchyme Absent GUDMAP:12833
TS23: early tubule Absent GUDMAP:12833
TS23: late tubule Absent GUDMAP:12833
TS23: renal vasculature Absent GUDMAP:12833
TS23: ureter Absent GUDMAP:12833
TS23: urethra of female Present GUDMAP:12833
TS23: bladder Absent GUDMAP:12833
TS23: ovary Absent GUDMAP:12833
TS23: female associated reproductive structure Absent GUDMAP:12833
TS23: pelvic ganglion Present GUDMAP:12833
Specimen GUDMAP:12834: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureteric tip Present GUDMAP:12834
TS23: ureteric trunk Ambiguous GUDMAP:12834
TS23: renal interstitium Absent GUDMAP:12834
TS23: cap mesenchyme Absent GUDMAP:12834
TS23: early tubule Absent GUDMAP:12834
TS23: late tubule Absent GUDMAP:12834
TS23: renal vasculature Absent GUDMAP:12834
TS23: ureter Absent GUDMAP:12834
TS23: urethra of male Present GUDMAP:12834
TS23: bladder Absent GUDMAP:12834
TS23: testis Present GUDMAP:12834
TS23: male associated reproductive structure Present GUDMAP:12834
TS23: pelvic ganglion Present GUDMAP:12834
Specimen GUDMAP:20765: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: metanephros Present GUDMAP:20765
TS23: nephrogenic zone Present GUDMAP:20765
TS23: ureteric tip Present Regionally restricted GUDMAP:20765 Expression strongest in the tip ends.
TS23: renal cortex Present GUDMAP:20765
TS23: renal vesicle Present Regionally restricted GUDMAP:20765
TS23: renal connecting segment of renal vesicle Present GUDMAP:20765
TS23: distal renal vesicle Present GUDMAP:20765
TS23: s-shaped body Present Regionally restricted GUDMAP:20765
TS23: renal connecting tubule of s-shaped body Present GUDMAP:20765
TS23: distal segment of s-shaped body Present GUDMAP:20765
TS23: medial segment of s-shaped body Present GUDMAP:20765
TS23: cortical renal tubule Present Regionally restricted GUDMAP:20765
TS23: cortical renal tubule of capillary loop nephron group Present Regionally restricted GUDMAP:20765
TS23: cap mesenchyme Absent GUDMAP:20765
TS23: nephrogenic interstitium Absent GUDMAP:20765
TS23: proximal renal vesicle Absent GUDMAP:20765
TS23: proximal segment of s-shaped body Absent GUDMAP:20765
TS23: capillary loop renal corpuscle Absent GUDMAP:20765
TS23: maturing renal corpuscle Absent GUDMAP:20765
TS23: cortical collecting duct Absent GUDMAP:20765
TS23: renal cortical interstitium Absent GUDMAP:20765
TS23: renal cortical vasculature Absent GUDMAP:20765
TS23: renal pelvis Absent GUDMAP:20765
TS23: renal medulla Absent GUDMAP:20765
TS23: immature loop of Henle Absent GUDMAP:20765
TS23: medullary collecting duct Absent GUDMAP:20765
TS23: renal medullary interstitium Absent GUDMAP:20765
TS23: pelvic urothelial lining Absent GUDMAP:20765
TS23: perihilar interstitium Absent GUDMAP:20765
TS23: pelvic smooth muscle Absent GUDMAP:20765
TS23: ureter Absent GUDMAP:20765
TS23: visceral epithelium of s-shaped body Absent GUDMAP:20765
TS23: parietal epithelium of s-shaped body Absent GUDMAP:20765
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20765
Specimen GUDMAP:20766: postnatal day 0 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS27: metanephros Present GUDMAP:20766
TS27: nephrogenic zone Present GUDMAP:20766
TS27: ureteric tip Present GUDMAP:20766
TS27: renal cortex Present GUDMAP:20766
TS27: renal vesicle Present GUDMAP:20766
TS27: renal connecting segment of renal vesicle Present GUDMAP:20766
TS27: distal renal vesicle Present GUDMAP:20766
TS27: s-shaped body Present GUDMAP:20766
TS27: distal segment of s-shaped body Present GUDMAP:20766
TS27: medial segment of s-shaped body Present GUDMAP:20766
TS27: renal connecting tubule of s-shaped body Present GUDMAP:20766
TS27: cortical renal tubule Present Regionally restricted GUDMAP:20766
TS27: cortical renal tubule of capillary loop nephron group Present Regionally restricted GUDMAP:20766
TS27: nephrogenic interstitium Absent GUDMAP:20766
TS27: cap mesenchyme Absent GUDMAP:20766
TS27: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20766
TS27: proximal renal vesicle Absent GUDMAP:20766
TS27: proximal segment of s-shaped body Absent GUDMAP:20766
TS27: visceral epithelium of s-shaped body Absent GUDMAP:20766
TS27: parietal epithelium of s-shaped body Absent GUDMAP:20766
TS27: capillary loop renal corpuscle Absent GUDMAP:20766
TS27: maturing renal corpuscle Absent GUDMAP:20766
TS27: mature renal corpuscle Absent GUDMAP:20766
TS27: cortical renal tubule of maturing nephron group Absent GUDMAP:20766
TS27: cortical renal tubule of mature nephron group Absent GUDMAP:20766
TS27: cortical collecting duct Absent GUDMAP:20766
TS27: renal cortical interstitium Absent GUDMAP:20766
TS27: renal cortical vasculature Absent GUDMAP:20766
TS27: renal medulla Absent GUDMAP:20766
TS27: renal pelvis Absent GUDMAP:20766
Specimen GUDMAP:20767: postnatal day 2 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS27: metanephros Present GUDMAP:20767
TS27: nephrogenic zone Present GUDMAP:20767
TS27: ureteric tip Present GUDMAP:20767
TS27: renal cortex Present GUDMAP:20767
TS27: renal vesicle Present GUDMAP:20767
TS27: renal connecting segment of renal vesicle Present GUDMAP:20767
TS27: distal renal vesicle Present GUDMAP:20767
TS27: s-shaped body Present GUDMAP:20767
TS27: cortical renal tubule Present Regionally restricted GUDMAP:20767
TS27: cortical renal tubule of capillary loop nephron group Present Regionally restricted GUDMAP:20767
TS27: nephrogenic interstitium Absent GUDMAP:20767
TS27: cap mesenchyme Absent GUDMAP:20767
TS27: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20767
TS27: capillary loop renal corpuscle Absent GUDMAP:20767
TS27: maturing renal corpuscle Absent GUDMAP:20767
TS27: mature renal corpuscle Absent GUDMAP:20767
TS27: cortical renal tubule of maturing nephron group Absent GUDMAP:20767
TS27: cortical renal tubule of mature nephron group Absent GUDMAP:20767
TS27: cortical collecting duct Absent GUDMAP:20767
TS27: renal cortical interstitium Absent GUDMAP:20767
TS27: renal cortical vasculature Absent GUDMAP:20767
TS27: renal medulla Ambiguous GUDMAP:20767
TS27: renal pelvis Absent GUDMAP:20767
TS27: outer renal medulla Ambiguous GUDMAP:20767
TS27: outer medullary collecting duct Ambiguous GUDMAP:20767
TS27: inner medullary collecting duct Ambiguous GUDMAP:20767
TS27: inner renal medulla Ambiguous GUDMAP:20767
TS27: proximal renal vesicle Present GUDMAP:20767
Specimen GUDMAP:20768: postnatal day 4 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS27: metanephros Present GUDMAP:20768
TS27: nephrogenic zone Present GUDMAP:20768
TS27: renal cortex Present GUDMAP:20768
TS27: renal vesicle Present GUDMAP:20768
TS27: renal connecting segment of renal vesicle Present GUDMAP:20768
TS27: distal renal vesicle Present GUDMAP:20768
TS27: s-shaped body Present GUDMAP:20768
TS27: cortical renal tubule Present Regionally restricted GUDMAP:20768
TS27: cortical renal tubule of capillary loop nephron group Present Regionally restricted GUDMAP:20768
TS27: nephrogenic interstitium Absent GUDMAP:20768
TS27: cap mesenchyme Absent GUDMAP:20768
TS27: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20768
TS27: capillary loop renal corpuscle Absent GUDMAP:20768
TS27: maturing renal corpuscle Absent GUDMAP:20768
TS27: mature renal corpuscle Absent GUDMAP:20768
TS27: cortical renal tubule of maturing nephron group Absent GUDMAP:20768
TS27: cortical renal tubule of mature nephron group Absent GUDMAP:20768
TS27: cortical collecting duct Absent GUDMAP:20768
TS27: renal cortical interstitium Absent GUDMAP:20768
TS27: renal cortical vasculature Absent GUDMAP:20768
TS27: renal medulla Absent GUDMAP:20768
TS27: renal pelvis Absent GUDMAP:20768
TS27: proximal renal vesicle Absent GUDMAP:20768
TS27: proximal segment of s-shaped body Absent GUDMAP:20768
TS27: visceral epithelium of s-shaped body Absent GUDMAP:20768
TS27: parietal epithelium of s-shaped body Absent GUDMAP:20768
TS27: renal connecting tubule of s-shaped body Present GUDMAP:20768
TS27: distal segment of s-shaped body Present GUDMAP:20768
TS27: medial segment of s-shaped body Present GUDMAP:20768
TS27: renal medullary interstitium Absent GUDMAP:20768
TS27: outer renal medulla Absent GUDMAP:20768
TS27: inner renal medulla Absent GUDMAP:20768
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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06/12/2024
MGI 6.13 		The Jackson Laboratory