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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540805
Gene symbol: Tgm5
Gene name: transglutaminase 5
Probe: RIKEN clone 9930108M24 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:8942: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Ambiguous GUDMAP:8942 signal seen is either non-specific background or moderate ubiquitous expression

Specimen GUDMAP:8943: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:8943
TS21: testis Present Regionally restricted GUDMAP:8943
TS21: primary sex cord Present GUDMAP:8943
TS21: mesonephros of male Ambiguous GUDMAP:8943 signal seen is likely be non-specific background compared with that seen in the testis

Specimen GUDMAP:8944: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Ambiguous GUDMAP:8944 signal seen may be non-specific background compared with that seen in the testis in this specimen
TS21: urogenital mesentery Ambiguous GUDMAP:8944 signal seen may be non-specific background compared with that seen in the testis in this specimen
TS21: metanephros Ambiguous GUDMAP:8944 signal seen may be non-specific background compared with that seen in the testis in this specimen

Specimen GUDMAP:8945: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Ambiguous GUDMAP:8945 signal seen may be non-specific background compared with that seen in the testis in this specimen
TS21: urogenital sinus Ambiguous GUDMAP:8945
TS21: primitive bladder Ambiguous GUDMAP:8945 signal seen may be non-specific background compared with that seen in the testis in this specimen

Specimen GUDMAP:8946: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:8946
TS21: mesonephros of female Present GUDMAP:8946
TS21: mesonephric mesenchyme of female Present GUDMAP:8946
TS21: mesonephric tubule of female Present GUDMAP:8946
TS21: cranial mesonephric tubule of female Present GUDMAP:8946
TS21: mesonephric glomerulus of female Present GUDMAP:8946
TS21: rest of cranial mesonephric tubule of female Present GUDMAP:8946
TS21: caudal mesonephric tubule of female Present GUDMAP:8946
TS21: nephric duct of female, mesonephric portion Present GUDMAP:8946
TS21: paramesonephric duct of female, mesonephric portion Present GUDMAP:8946
TS21: coelomic epithelium of female mesonephros Present GUDMAP:8946
TS21: nephric duct of female, rest of Present GUDMAP:8946
TS21: epithelium of nephric duct of female Present GUDMAP:8946
TS21: mesenchyme of nephric duct of female Present GUDMAP:8946
TS21: paramesonephric duct of female, rest of Present GUDMAP:8946
TS21: epithelium of rest of paramesonephric duct of female Present GUDMAP:8946
TS21: mesenchyme of rest of paramesonephric duct of female Present GUDMAP:8946
TS21: ovary Present GUDMAP:8946
TS21: surface epithelium of ovary Present GUDMAP:8946
TS21: mesenchymal stroma of ovary Present GUDMAP:8946
TS21: germ cell of ovary Present GUDMAP:8946
TS21: developing vasculature of ovary Present GUDMAP:8946

Specimen GUDMAP:8947: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Ambiguous GUDMAP:8947
TS21: urogenital mesentery Ambiguous GUDMAP:8947
TS21: metanephros Ambiguous GUDMAP:8947 signal seen may be background staining
TS21: ureter Ambiguous GUDMAP:8947 possible expression in the ureteral mesenchyme
TS21: ureteral mesenchyme Ambiguous GUDMAP:8947 possible signal

Specimen GUDMAP:8948: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Ambiguous GUDMAP:8948 signal seen may be non-specific background
TS21: urogenital sinus Ambiguous GUDMAP:8948
TS21: primitive bladder Ambiguous GUDMAP:8948 signal seen may be non-specific background

Specimen GUDMAP:9896: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:9896
TS23: metanephros Present Regionally restricted GUDMAP:9896
TS23: renal cortex Present Regionally restricted GUDMAP:9896
TS23: renal cortical interstitium Present GUDMAP:9896
TS23: renal medulla Present Regionally restricted GUDMAP:9896
TS23: renal medullary interstitium Present GUDMAP:9896
TS23: renal pelvis Present Regionally restricted GUDMAP:9896
TS23: pelvic smooth muscle Present GUDMAP:9896 expression detected in pelvic smooth muscle is very weak.
TS23: perihilar interstitium Present GUDMAP:9896
TS23: renal interstitium Present GUDMAP:9896
TS23: nephrogenic zone Absent GUDMAP:9896
TS23: renal vesicle Absent GUDMAP:9896
TS23: comma-shaped body Absent GUDMAP:9896
TS23: s-shaped body Absent GUDMAP:9896
TS23: capillary loop renal corpuscle Absent GUDMAP:9896
TS23: maturing renal corpuscle Absent GUDMAP:9896
TS23: cortical renal tubule Absent GUDMAP:9896
TS23: renal connecting tubule Absent GUDMAP:9896
TS23: cortical collecting duct Absent GUDMAP:9896
TS23: renal cortical vasculature Absent GUDMAP:9896
TS23: immature loop of Henle Absent GUDMAP:9896
TS23: renal medullary vasculature Absent GUDMAP:9896
TS23: medullary collecting duct Absent GUDMAP:9896
TS23: pelvic urothelial lining Absent GUDMAP:9896
TS23: developing capillary loop stage nephron group Absent GUDMAP:9896
TS23: maturing nephron Absent GUDMAP:9896
TS23: collecting duct Absent GUDMAP:9896
TS23: renal vasculature Absent GUDMAP:9896
TS23: early nephron Absent GUDMAP:9896
TS23: late tubule Absent GUDMAP:9896

Specimen GUDMAP:9897: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urothelium of ureter Absent GUDMAP:9897
TS23: ureter Ambiguous GUDMAP:9897
TS23: ureteral mesenchyme Ambiguous GUDMAP:9897
TS23: ureteral smooth muscle layer Ambiguous GUDMAP:9897 possible weak expression detected.
TS23: ureteral mesenchyme outer layer Ambiguous GUDMAP:9897 possible weak expression detected.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory