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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541529
Gene symbol: Col16a1
Gene name: collagen, type XVI, alpha 1
Probe: RIKEN clone 2700007F12
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:6973: postnatal adult (more )
Note: Labeling was visualized using NBT/BCIP. Annotators reported some background staining.
Structure Level Pattern Image Note
TS28: mesovarium Present GUDMAP:6973 the only specific expression is in connective tissue surrounding uterus and oviduct in images 1 and 2.
TS28: ovary Absent GUDMAP:6973
TS28: uterus Absent GUDMAP:6973
Specimen GUDMAP:7045: postnatal adult (more )
Note: Labeling was visualized using NBT/BCIP. Annotators reported some background staining.
Structure Level Pattern Image Note
TS28: testis Present GUDMAP:7045
TS28: seminiferous tubule Present GUDMAP:7045
TS28: spermatocyte Present GUDMAP:7045
Specimen GUDMAP:7276: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: metanephros Absent GUDMAP:7276
TS20: urinary system Ambiguous GUDMAP:7276
TS20: urinary system mesentery Ambiguous GUDMAP:7276
TS20: urogenital sinus Ambiguous GUDMAP:7276
TS20: primitive bladder Ambiguous GUDMAP:7276
Specimen GUDMAP:7277: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Absent GUDMAP:7277 any staining seen is background
Specimen GUDMAP:7278: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: female reproductive system Present GUDMAP:7278
TS20: mesonephros of female Present GUDMAP:7278 appears to be restricted to the medial mesenchyme
TS20: mesonephric mesenchyme of female Present GUDMAP:7278 appears to be restricted to the medial mesenchyme
TS20: urogenital mesentery Present GUDMAP:7278
Specimen GUDMAP:7279: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: male reproductive system Present GUDMAP:7279
TS20: mesonephros of male Present GUDMAP:7279
TS20: mesonephric mesenchyme of male Present GUDMAP:7279
TS20: testis Present GUDMAP:7279 strongest signal in the interstitium of the testis
TS20: urogenital mesentery Present GUDMAP:7279
Specimen GUDMAP:8404: embryonic day 15.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS23: bladder Present GUDMAP:8404
TS23: urothelium of bladder Absent GUDMAP:8404
TS23: detrusor muscle of bladder Absent GUDMAP:8404
Specimen GUDMAP:8797: embryonic day 15.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS23: metanephros Present Regionally restricted GUDMAP:8797 expression in renal interstitium strongest in medulla and pelvic and perihilar regions
TS23: renal interstitium Present GUDMAP:8797
TS23: nephrogenic interstitium Present GUDMAP:8797
TS23: associated interstitium of capillary loop renal corpuscle Present GUDMAP:8797
TS23: renal cortical interstitium Present GUDMAP:8797
TS23: renal medullary interstitium Present GUDMAP:8797
TS23: perihilar interstitium Present GUDMAP:8797
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/17/2024
MGI 6.24 		The Jackson Laboratory