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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541742
Gene symbol: Col6a3
Gene name: collagen, type VI, alpha 3
Probe: RIKEN clone 4732489C18 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:7922: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: male reproductive system Present GUDMAP:7922
TS20: testis Present GUDMAP:7922
TS20: mesonephros of male Present GUDMAP:7922
TS20: mesonephric mesenchyme of male Present GUDMAP:7922
TS20: mesonephric tubule of male Absent GUDMAP:7922
TS20: paramesonephric duct of male, mesonephric portion Absent GUDMAP:7922
TS20: nephric duct of male, mesonephric portion Ambiguous GUDMAP:7922
Specimen GUDMAP:7923: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urinary system Present GUDMAP:7923
TS20: metanephros Present GUDMAP:7923
TS20: urogenital mesentery Present GUDMAP:7923
Specimen GUDMAP:7924: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urinary system Present GUDMAP:7924
TS20: metanephros Present GUDMAP:7924
TS20: urogenital mesentery Present GUDMAP:7924
TS20: primitive bladder Present GUDMAP:7924
Specimen GUDMAP:7925: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: female reproductive system Present GUDMAP:7925
TS20: ovary Present GUDMAP:7925 weak signal
TS20: mesonephros of female Present GUDMAP:7925
TS20: mesonephric mesenchyme of female Present GUDMAP:7925 signal absent from lateral mesenchyme surrounding paramesonephric duct
TS20: paramesonephric duct of female, mesonephric portion Absent GUDMAP:7925
TS20: nephric duct of female, mesonephric portion Ambiguous GUDMAP:7925 signal is either weak or absent
TS20: mesonephric tubule of female Ambiguous GUDMAP:7925 signal is either weak or absent
Specimen GUDMAP:8081: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Ambiguous GUDMAP:8081 signal seen may be background staining
Specimen GUDMAP:20976: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: metanephros Present GUDMAP:20976
TS23: renal cortex Present GUDMAP:20976
TS23: renal medulla Present GUDMAP:20976
TS23: renal pelvis Present GUDMAP:20976
TS23: ureter Present GUDMAP:20976
TS23: pelvic smooth muscle Present GUDMAP:20976
TS23: ureteral mesenchyme Present GUDMAP:20976
TS23: renal cortical interstitium Present GUDMAP:20976
TS23: renal medullary interstitium Present GUDMAP:20976
TS23: perihilar interstitium Present GUDMAP:20976
TS23: nephrogenic zone Present GUDMAP:20976
TS23: nephrogenic interstitium Present GUDMAP:20976
TS23: cap mesenchyme Ambiguous GUDMAP:20976
TS23: ureteric tip Absent GUDMAP:20976
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20976
TS23: cortical renal tubule Ambiguous GUDMAP:20976
TS23: cortical collecting duct Absent GUDMAP:20976
TS23: immature loop of Henle Ambiguous GUDMAP:20976
TS23: medullary collecting duct Absent GUDMAP:20976
TS23: pelvic urothelial lining Absent GUDMAP:20976
TS23: collecting duct Absent GUDMAP:20976
TS23: ureteric trunk Absent GUDMAP:20976
TS23: maturing renal corpuscle Ambiguous GUDMAP:20976
TS23: urothelium of ureter Absent GUDMAP:20976
TS23: renal cortical vasculature Ambiguous GUDMAP:20976
TS23: ureteral smooth muscle layer Present GUDMAP:20976
TS23: ureteral mesenchyme outer layer Present GUDMAP:20976
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory