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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541790
Gene symbol: Foxi1
Gene name: forkhead box I1
Probe: RIKEN clone 5830401E05 subclone 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:12558: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: nephrogenic zone Absent GUDMAP:12558
TS23: nephrogenic interstitium Absent GUDMAP:12558
TS23: cap mesenchyme Absent GUDMAP:12558
TS23: pretubular aggregate Absent GUDMAP:12558
TS23: ureteric tip Absent GUDMAP:12558
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:12558
TS23: renal vesicle Absent GUDMAP:12558
TS23: comma-shaped body Absent GUDMAP:12558
TS23: s-shaped body Absent GUDMAP:12558
TS23: capillary loop renal corpuscle Absent GUDMAP:12558
TS23: maturing renal corpuscle Absent GUDMAP:12558
TS23: renal cortical interstitium Absent GUDMAP:12558
TS23: renal cortical vasculature Absent GUDMAP:12558
TS23: early tubule Absent GUDMAP:12558
TS23: immature loop of Henle Absent GUDMAP:12558
TS23: renal medullary interstitium Absent GUDMAP:12558
TS23: renal medullary vasculature Absent GUDMAP:12558
TS23: pelvic urothelial lining Absent GUDMAP:12558
TS23: pelvic smooth muscle Absent GUDMAP:12558
TS23: perihilar interstitium Absent GUDMAP:12558
TS23: renal pelvis Absent GUDMAP:12558
TS23: renal interstitium Absent GUDMAP:12558
TS23: ureter Absent GUDMAP:12558
TS23: urothelium of ureter Absent GUDMAP:12558
TS23: ureteral mesenchyme Absent GUDMAP:12558
TS23: ureteral vasculature Absent GUDMAP:12558
TS23: urinary system Present GUDMAP:12558
TS23: metanephros Present GUDMAP:12558
TS23: renal cortex Present GUDMAP:12558
TS23: cortical collecting duct Present Spotted GUDMAP:12558 Some cells of the collecting duct show strong expression and some show no expression.
TS23: renal medulla Present GUDMAP:12558
TS23: medullary collecting duct Present Spotted GUDMAP:12558 Some cells of the collecting duct show strong expression and some show no expression.
TS23: collecting duct Present GUDMAP:12558
TS23: ureteric trunk Present GUDMAP:12558
TS23: cortical renal tubule Present GUDMAP:12558
TS23: cortical early distal tubule Present Spotted GUDMAP:12558 Expression in the early distal tubules of maturing stage IV nephrons only. With spotted expression pattern - strong expression in some distal tubule cells and no expression in others.
TS23: maturing nephron Present GUDMAP:12558
TS23: late tubule Present GUDMAP:12558
TS23: cortical early proximal tubule Absent GUDMAP:12558
TS23: anlage of loop of Henle of cortical renal tubule Absent GUDMAP:12558
TS23: renal connecting tubule Present Spotted GUDMAP:12558 Expression in the renal connecting tubules of maturing stage IV nephrons only. With spotted expression pattern - strong expression in some cells and no expression in others.
TS23: early distal tubule of maturing nephron Present GUDMAP:12558
TS23: cortical renal tubule of maturing nephron group Present GUDMAP:12558
TS23: cortical renal tubule of capillary loop nephron group Absent GUDMAP:12558
TS23: early distal tubule of capillary loop nephron Absent GUDMAP:12558
TS23: early proximal tubule of capillary loop nephron Absent GUDMAP:12558
TS23: renal connecting tubule of capillary loop nephron Absent GUDMAP:12558
TS23: early proximal tubule of maturing nephron Absent GUDMAP:12558
TS23: renal connecting tubule of maturing nephron Present GUDMAP:12558
Specimen GUDMAP:12559: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Absent GUDMAP:12559
TS23: urothelium of ureter Absent GUDMAP:12559
TS23: ureteral mesenchyme Absent GUDMAP:12559
TS23: ureteral vasculature Absent GUDMAP:12559
Specimen GUDMAP:13806: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple. The low level expression control (Shh) probe did not detect expression. Thus, low levels of expression may not be detected in this experiment.
Structure Level Pattern Image Note
TS28: metanephros Present GUDMAP:13806
TS28: renal cortex Present GUDMAP:13806
TS28: renal medulla Present GUDMAP:13806
TS28: cortical collecting duct Present Spotted GUDMAP:13806 From the literature we know that Foxi1 is expressed in intercalated cells of the collecting duct, hence the spotted pattern of expression.
TS28: outer renal medulla Present GUDMAP:13806
TS28: inner renal medulla Present GUDMAP:13806
TS28: outer medullary collecting duct Present Spotted GUDMAP:13806 From the literature we know that Foxi1 is expressed in intercalated cells of the collecting duct, hence the spotted pattern of expression.
TS28: inner medullary collecting duct Present Spotted GUDMAP:13806 From the literature we know that Foxi1 is expressed in intercalated cells of the collecting duct, hence the spotted pattern of expression.
TS28: mature renal corpuscle Absent GUDMAP:13806
TS28: renal cortical interstitium Absent GUDMAP:13806
TS28: renal cortical vasculature Absent GUDMAP:13806
TS28: renal proximal tubule Absent GUDMAP:13806
TS28: loop of Henle, outer medullary portion Absent GUDMAP:13806
TS28: outer medullary interstitium Absent GUDMAP:13806
TS28: loop of Henle, inner medullary portion Absent GUDMAP:13806
TS28: inner medullary interstitium Absent GUDMAP:13806
TS28: renal pelvis Absent GUDMAP:13806
TS28: renal medullary vasculature Absent GUDMAP:13806
TS28: collecting duct Present GUDMAP:13806 Expression in the intercalated cells of the collecting duct appears more numerous in the outer medulla. There are fewer cells expressing Foxi1 in the cortex and inner medulla.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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06/12/2024
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