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Gene Expression Data
Assay Details
Assay
Reference: J:71423 Houweling AC, et al., Gene and cluster-specific expression of the Iroquois family members during mouse development. Mech Dev. 2001 Sep;107(1-2):169-74
Assay type: RNA in situ
MGI Accession ID: MGI:5661598
Gene symbol: Irx3
Gene name: Iroquois related homeobox 3
Probe: Irx3 cDNA8
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen not shown: embryonic day 6.5 (more )
Structure Level Pattern Image Note
TS8: extraembryonic component Present
TS8: embryo Absent

Specimen not shown: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: neural ectoderm Present Expression is present in the neural plate.

Specimen 1B: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: head mesenchyme Present 1B Irx3
TS20: heart Present 1B Irx3
TS20: facial ganglion Present 1B Irx3
TS20: vestibulo-cochlear ganglion Present 1B Irx3
TS20: metencephalon Present 1B Irx3
TS20: spinal cord Present 1B Irx3 Expression is present in the neural tube.
TS20: otic capsule Present 1B Irx3
TS20: skin Present 1B Irx3

Specimen 2D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Present Regionally restricted 2D Expression is present ventrolaterally.
TS19: metencephalon Present Regionally restricted 2D Expression is present dorsolaterally.
TS19: metencephalon basal plate Strong Regionally restricted 2D Expression is found in the sensory region and lateral region of the motor part of the pons.
TS19: cerebellum primordium Weak 2D

Specimen 2J: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural tube ventricular layer Present 2J
TS19: neural tube alar columns Present 2J Expression is in the mantle layer.
TS19: neural tube basal columns Present 2J Expression is in the mantle layer.
TS19: neural tube lateral wall Present 2J Expression is present in motor neurons.
TS19: neural tube floor plate Absent 2J
TS19: neural tube roof plate Absent 2J
TS19: notochord Present 2J

Specimen 2P: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: inner ear Present 2P Expression is present in the otic vesicle.
TS19: facial ganglion Present Regionally restricted 2P Expression is present in the ganglia medial to the cranial cardinal vein.

Specimen 3G: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: neural retinal epithelium Present Regionally restricted 3G Expression is present in the marginal zone.

Specimen 3K: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lower jaw molar Present 3K
TS21: upper jaw molar Present 3K
TS21: oral epithelium Present 3K Expression extends lateral from the molar tooth primordia.

Specimen limb--9.5: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: limb mesenchyme Present Regionally restricted Expression is present in the proximal region over the antero-posterior axis, highest at the dorsal side.

Specimen limb--10.5: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: limb mesenchyme Present Regionally restricted Expression is present proximally.

Specimen limb--11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forelimb bud mesenchyme Present Regionally restricted Expression is present in the proximal limb.
TS19: hindlimb bud mesenchyme Present Regionally restricted Expression is present in the proximal limb.

Specimen limb--12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forelimb mesenchyme Present Regionally restricted Expression is present in the proximal limb.
TS20: hindlimb mesenchyme Present Regionally restricted Expression is present in the proximal limb.

Specimen limb--13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: forelimb interdigital region mesenchyme Present
TS21: hindlimb interdigital region mesenchyme Present

Specimen 4E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forelimb interdigital region mesenchyme Present 4E

Specimen limb--14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hindlimb interdigital region mesenchyme Present

Specimen 4F: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindlimb bud mesenchyme Present Regionally restricted 4F Expression is present in the proximal region.

Specimen 5D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: trachea epithelium Present 5D Expression in the laryncho-tracheal groove endoderm.
TS19: trachea mesenchyme Absent 5D No expression in the laryncho-tracheal groove mesenchyme.
TS19: foregut epithelium Present 5D Expression in foregut endoderm.

Specimen 5J: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: left ventricle cardiac muscle Present 5J Expression is present in the trabeculated myocardium.
TS21: right ventricle cardiac muscle Present 5J Expression is present in the trabeculated myocardium.
TS21: lung epithelium Present 5J
TS21: lung mesenchyme Absent 5J

Specimen 5M: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: gonad Strong 5M
TS21: metanephros Present Regionally restricted 5M Expression is present in the margin between the cortex and the medulla.
TS21: cap mesenchyme Present Regionally restricted 5M Expression is present in the blastema.
TS21: stomach Present Regionally restricted 5M Expression is present in outer curvature of the stomach endoderm.

Specimen not shown: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: primitive ventricle cardiac muscle Present Regionally restricted Expression is present in the trabeculations.

Specimen not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: otocyst Present Regionally restricted Expression is medial, adjacent to the hindbrain.

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: lung epithelium Present
TS17: lung mesenchyme Absent

Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: pancreas primordium Absent
TS19: gonad Strong
TS19: acoustic ganglion Present Expression is present in the complex.
TS19: facial ganglion Present Expression is present in the complex.

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: nasal capsule Present Expression is present in the cartilage.
TS21: dermis Present
TS21: epidermis Weak
TS21: mammary gland primordium Present
TS21: vibrissa follicle Weak Expression is present in the germinal matrix.
TS21: thalamus Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory