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Gene Expression Data
Assay Details
Assay
Reference: J:85879 Nakagawa Y, et al., Dynamic patterned expression of orphan nuclear receptor genes RORalpha and RORbeta in developing mouse forebrain. Dev Neurosci. 2003 Mar-Aug;25(2-4):234-44
Assay type: RNA in situ
MGI Accession ID: MGI:5693265
Gene symbol: Rorb
Gene name: RAR-related orphan receptor beta
Probe: Rorbeta cDNA2
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1D: embryonic day 17.5 (more )
Note: Rostral dorsal thalamus.
Structure Level Pattern Image Note
TS25: thalamus Present Regionally restricted 1D Low expression in the ventroposterior, posterior and mediodorsal nuclei, and moderate expression in the medial geniculate nucleus. No expression in the dorsal lateral geniculate nucleus. High expression in the centromedial nuclei.

Specimen 1E: embryonic day 17.5 (more )
Note: Caudal dorsal thalamus.
Structure Level Pattern Image Note
TS25: thalamus Present Regionally restricted 1E Low expression in the ventroposterior, posterior and mediodorsal nuclei, and moderate expression in the medial geniculate nucleus. No expression in the dorsal lateral geniculate nucleus. High expression in the centromedial nuclei.

Specimen 1F: postnatal day 2 (more )
Note: Rostral dorsal thalamus.
Structure Level Pattern Image Note
TS27: ventral posterior thalamic group Present Graded 1F Increased expression compared to E17.5. Expressed strongly in what appears to be the medial subdivision that relays trigeminal system inputs, and low or nondetectable expression in the lateral subdivision that relays lemniscal inputs.
TS27: medial dorsal thalamic nucleus Present 1F
TS27: ventral lateral geniculate nucleus Present 1F
TS27: dorsal lateral geniculate nucleus Weak 1F Very low expression.

Specimen 2B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Absent 2B

Specimen 2E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS21: thalamus mantle layer Absent 2E

Specimen 3A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: neocortex Absent 3A

Specimen 3B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: neocortex Present Regionally restricted 3B Expressed in the emerging cortical plate in the lateral part of neocortex at a rostral level.
TS22: ganglionic eminence Present 3B

Specimen 3C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: neocortex Present Regionally restricted 3C Expressed in cortical plate. Expression is much higher at rostral levels than at caudal levels. High lateral to low medial gradient.

Specimen 3D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: neocortex Present Regionally restricted 3D Expressed in cortical plate. Expression is much higher at rostral levels than at caudal levels.

Specimen 3E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: neocortex Present Graded 3E High rostral to low caudal gradient.

Specimen 3F: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neocortex Present Regionally restricted 3F Higher expression in the putative somatosensory area, located roughly in the middle of mediolateral axis. Expression is much higher at rostral levels than at caudal levels.

Specimen 3G: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neocortex Weak Uniform 3G Expression increased selectively in the presumptive visual and auditory areas. Expression is much higher at rostral levels than at caudal levels.

Specimen 4A: postnatal day 0 (more )
Note: 0.5 h after birth. Rostral neocortex.
Structure Level Pattern Image Note
TS27: neocortex Strong Regionally restricted 4A More pronounced expression in the somatosensory area than at E18.5. The level of expression is strongest in the middle layer.
TS27: primary somatosensory cortex Present 4A

Specimen 4E: postnatal day 0 (more )
Note: Caudal neocortex.
Structure Level Pattern Image Note
TS27: neocortex Strong Regionally restricted 4E Highly expressed in the putative visual area in the caudal neocortex. The level of expression is strongest in the middle layer.

Specimen 4B: postnatal day 2 (more )
Note: Rostral neocortex.
Structure Level Pattern Image Note
TS27: cortical layer IV Strong Regionally restricted 4B Expressed in the primary somatosensory, visual, and auditory areas.
TS27: cortical layer V Present Scattered 4B
TS27: primary somatosensory cortex Strong Regionally restricted 4B Expressed at a high level in layer 4, and in scattered cells in layer 5.
TS27: visual cortex Strong Regionally restricted 4B Expressed at a high level in layer 4, and in scattered cells in layer 5.

Specimen 4F: postnatal day 2 (more )
Note: Caudal neocortex.
Structure Level Pattern Image Note
TS27: cortical layer IV Strong Regionally restricted 4F Expressed in the primary somatosensory, visual, and auditory areas.
TS27: cortical layer V Present Scattered 4F
TS27: primary somatosensory cortex Strong Regionally restricted 4F Expressed at a high level in layer 4, and in scattered cells in layer 5.
TS27: visual cortex Strong Regionally restricted 4F Expressed at a high level in layer 4, and in scattered cells in layer 5.

Specimen 4C: postnatal day 5 (more )
Note: Rostral neocortex.
Structure Level Pattern Image Note
TS28: primary somatosensory cortex Strong Regionally restricted 4C Expressed in layers 4 and 5.
TS28: cortical layer IV Strong Regionally restricted 4C Expressed in the primary somatosensory area, including the posteromedial barrel subfield.
TS28: cortical layer V Strong Regionally restricted 4C Expressed in the primary somatosensory area, including the posteromedial barrel subfield.

Specimen 4G: postnatal day 5 (more )
Note: Caudal neocortex.
Structure Level Pattern Image Note
TS28: cortical layer IV Strong Regionally restricted 4G Expressed in the primary visual area.
TS28: cortical layer V Strong Regionally restricted 4G Expressed in the primary visual area.
TS28: visual cortex Strong Regionally restricted 4G Expressed as a thick band in layers 4 and 5.

Specimen 6E: postnatal day 1 (more )
Note: 24 h after birth
Structure Level Pattern Image Note
TS27: neocortex Present 6E

Specimen 6G: postnatal day 5 (more )
Structure Level Pattern Image Note
TS28: neocortex Present 6G

Specimen not shown: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: medial geniculate nucleus Present Graded Increased expression compared to E17.5. Expressed strongly in what appears to be the medial subdivision that relays trigeminal system inputs, and low or nondetectable expression in the lateral subdivision that relays lemniscal inputs.

Specimen not shown: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: neocortex Present

Specimen not shown: postnatal day 0 (more )
Note: 0.5 h after birth.
Structure Level Pattern Image Note
TS27: neocortex Strong Regionally restricted Highly expressed in auditory areas in the caudal neocortex.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory