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Gene Expression Data
Assay Details
Assay
Reference: J:43268 Hargrave M, et al., Expression of the Sox11 gene in mouse embryos suggests roles in neuronal maturation and epithelio-mesenchymal induction. Dev Dyn. 1997 Oct;210(2):79-86
Assay type: RNA in situ
MGI Accession ID: MGI:5780567
Gene symbol: Sox11
Gene name: SRY (sex determining region Y)-box 11
Probe: Sox11c.1 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4a: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: alimentary system Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: branchial arch Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: genitourinary system Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: musculature Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: neural ectoderm Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: primitive streak Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: sensory organ system Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: surface ectoderm Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: vascular system Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: visceral organ system Weak 4a Generalized expression throughout the embryo except in the heart.
TS13: heart Absent 4a

Specimen 4b: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: alimentary system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: branchial arch Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: genitourinary system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: musculature Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: musculoskeletal system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: nervous system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: respiratory system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: sensory organ system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: somite Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: vascular system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: visceral organ system Weak 4b Generalized expression throughout the embryo except in the heart.
TS15: heart Absent 4b

Specimen 4c: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Strong 4c
TS17: future spinal cord Strong 4c
TS17: midbrain Strong 4c
TS17: branchial arch Present 4c
TS17: limb bud Present 4c
TS17: nasal mesenchyme Present 4c
TS17: head mesenchyme Present Regionally restricted 4c Expression is in the nasofacial mesenchyme.
TS17: somite Present Regionally restricted 4c Expression is throughout in the caudal somites and at the rostral and caudal boundaries of more mature somites.
TS17: heart Absent 4c

Specimen 4e: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forebrain Strong 4e
TS19: future spinal cord Strong 4e
TS19: midbrain Strong 4e
TS19: 1st branchial arch Present 4e
TS19: genital tubercle Present 4e
TS19: outer ear Present 4e
TS19: limb bud Present Regionally restricted 4e Expression is stronger distal.
TS19: somite Present Regionally restricted 4e Expression is throughout in the caudal somites and at the rostral and caudal boundaries of more mature somites.
TS19: heart Absent 4e

Specimen 4f: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: dorsal root ganglion Present 4f
TS19: neural tube lateral wall Present 4f Expression is strongest adjacent to the ventricular layer.

Specimen 4g: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 4g Expression is strongest adjacent to the ventricular layer.

Specimen 4h: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Strong 4h
TS20: midbrain Strong 4h
TS20: spinal cord Strong 4h
TS20: autopod Strong Regionally restricted 4h Expression is surrounding the cartilage condensations of the digits.
TS20: limb Present 4h
TS20: mammary bud Present 4h
TS20: outer ear Present 4h
TS20: tail somite Present 4h
TS20: vibrissa follicle Present 4h
TS20: eye Present Regionally restricted 4h Expression is in the eyelids.
TS20: heart Absent 4h

Specimen 4i: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Present 4i
TS20: midbrain Present 4i
TS20: spinal cord Present Regionally restricted 4i Expression is as two stripes.

Specimen 4j: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 4j
TS20: olfactory epithelium Present 4j
TS20: spinal cord Present 4j
TS20: face Present 4j Expression is stronger in the mesenchyme.

Specimen 4k: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 4k
TS20: dorsal root ganglion Present 4k
TS20: face Present 4k Expression is stronger in the mesenchyme.
TS20: genital tubercle Present 4k Expression is stronger in the mesenchyme.

Specimen 4l: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present 4l
TS20: hindbrain Present 4l
TS20: trigeminal ganglion Present 4l
TS20: face Present 4l Expression is stronger in the mesenchyme.

Specimen 4m: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Present 4m
TS20: mammary bud Present 4m
TS20: paramesonephric duct Present 4m
TS20: spinal cord Present 4m
TS20: stomach epithelium Present 4m
TS20: genital tubercle Present 4m Expression is stronger in the mesenchyme.

Specimen 4n: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: mammary gland primordium Present 4n
TS21: tail somite Present 4n
TS21: vibrissa follicle Present 4n
TS21: foot Strong Regionally restricted 4n Expression is in the distal extermity particularly surrounding the digit condensations.

Specimen 4o: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: dorsal root ganglion Present 4o
TS21: esophagus epithelium Present 4o
TS21: spinal cord Present 4o
TS21: sympathetic nerve trunk Present 4o
TS21: lung Present 4o Strongest expression is in the epithelia of the bronchial ducts and the surrounding mesenchyme.

Specimen 4p: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: comma-shaped body Present 4p
TS21: s-shaped body Present 4p
TS21: collecting duct Weak 4p
TS21: mesenchyme of metanephros Weak Regionally restricted 4p Expression is in the uninduced mesenchyme at the periphery of the kidney.

Specimen 4q: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Weak 4q
TS23: trigeminal ganglion Weak 4q

Specimen not shown E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Weak Regionally restricted Expression is at the caudal end.
TS23: salivary gland epithelium Weak
TS23: tooth epithelium Weak

Specimen not shown E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: metanephros Present Regionally restricted Expression is in the less mature outer layer.
TS22: salivary gland epithelium Present
TS22: tooth epithelium Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory