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Gene Expression Data
Assay Details
Assay
Reference: J:116335 Gammill LS, et al., Neuropilin 2/semaphorin 3F signaling is essential for cranial neural crest migration and trigeminal ganglion condensation. J Neurobiol. 2006 Oct 20;67(1):47-56
Assay type: RNA in situ
MGI Accession ID: MGI:6490441
Gene symbol: Sema3f
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Probe: Sema3f probe7
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 2D: embryonic day 9.0 (more )
Note: 14 somites
Structure Level Pattern Image Note
TS14: future midbrain Present Regionally restricted 2D Stripes of expression at level of caudal midbrain, and rhombomeres 3 and 5.
TS14: rhombomere 3 Present Regionally restricted 2D Stripes of expression at level of caudal midbrain, and rhombomeres 3 and 5.
TS14: rhombomere 5 Present Regionally restricted 2D Stripes of expression at level of caudal midbrain, and rhombomeres 3 and 5.

Specimen 2E: embryonic day 9.25 (more )
Note: 20 somites
Structure Level Pattern Image Note
TS14: future midbrain Present Regionally restricted 2E Expression in broad bands in forebrain and caudal midbrain.
TS14: prosencephalon Present Regionally restricted 2E Expression in broad bands in forebrain and caudal midbrain.

Specimen 2F: embryonic day 9.5 (more )
Note: 26 somites
Structure Level Pattern Image Note
TS15: head Present Regionally restricted 2F Expression in frontal portion of face.
TS15: head surface ectoderm Present 2F
TS15: pharynx epithelium Present 2F

Specimen 2K: embryonic day 9.25 (more )
Note: 20 somites
Structure Level Pattern Image Note
TS14: rhombomere 3 Present 2K

Specimen 2L: embryonic day 9.25 (more )
Note: 20 somites
Structure Level Pattern Image Note
TS14: rhombomere 5 Present 2L

Specimen 2M: embryonic day 9.5 (more )
Note: 26 somites
Structure Level Pattern Image Note
TS15: future midbrain Present 2M Expression stripes in neural tube.
TS15: rhombomere 3 Present 2M Expression stripes in neural tube.
TS15: rhombomere 5 Present 2M Expression stripes in neural tube.
TS15: head mesenchyme Present 2M Expression extends into cranial mesenchyme.

Specimen 2N: embryonic day 9.5 (more )
Note: 26 somites
Structure Level Pattern Image Note
TS15: 1st branchial arch mesenchyme Present Regionally restricted 2N Expression in core of first and second branchial arches.
TS15: 2nd branchial arch mesenchyme Present Regionally restricted 2N Expression in core of first and second branchial arches.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory