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Gene Expression Data
Assay Details
Assay
Reference: J:311233 Huang YT, et al., Lateral cortical Cdca7 expression levels are regulated by Pax6 and influence the production of intermediate progenitors. BMC Neurosci. 2017 Jun 5;18(1):47
Assay type: RNA in situ
MGI Accession ID: MGI:7286364
Gene symbol: Pax6
Gene name: paired box 6
Probe: Pax6 cDNA5
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1A/A': embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex ventricular layer Present Graded 1A , 1A' Expressed from high rostro-laterally to low caudo-medially with highest expression level at the lateral cortex, and a sharp reduction at the pallial-subpallial boundary.
TS20: lateral ganglionic eminence Weak 1A' , 1A

Specimen 1B/B': embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex ventricular layer Present Graded 1B' , 1B Expressed from high rostro-laterally to low caudo-medially with highest expression level at the anterior cortex, and a sharp reduction at the pallial-subpallial boundary.

Specimen 1C/C': embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: cerebral cortex ventricular layer Present 1C , 1C' Expression was abnormal in the cortex and decreased less sharply at the pallial-subpallial boundary.
TS20: lateral ganglionic eminence Present 1C' , 1C

Specimen 1D/D': embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: cerebral cortex ventricular layer Present 1D' , 1D Expression was abnormal in the cortex and decreased less sharply at the pallial-subpallial boundary.

Specimen 2A/A': embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Strong Graded 2A , 2A' Expression levels were consistently high across the pallium and declined sharply at the pallial-subpallial boundary.
TS22: lateral ganglionic eminence Weak 2A , 2A'

Specimen 2B/B': embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Present 2B , 2B' Expression declined more gradually at the pallial-subpallial boundary.
TS22: lateral ganglionic eminence Present 2B , 2B'

Specimen not shown: embryonic day 13.5 (more )
Note: Quantitative analysis was summarized in Fig 3E and 3F.
Structure Level Pattern Image Note
TS21: cerebral cortex ventricular layer Present
TS21: lateral ganglionic eminence Present

Specimen not shown: embryonic day 13.5; Pax6Sey/Pax6Sey (more )
Note: Quantitative analysis was summarized in Fig 3E and 3F.
Structure Level Pattern Image Note
TS21: cerebral cortex ventricular layer Present
TS21: lateral ganglionic eminence Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory