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Gene Expression Data
Assay Details
Assay
Reference: J:48211 Sugimoto M, et al., Differential in situ expression of alpha2(XI) collagen mRNA isoforms in the developing mouse. Cell Tissue Res. 1998 May;292(2):325-32
Assay type: RNA in situ
MGI Accession ID: MGI:7662842
Gene symbol: Col11a1
Gene name: collagen, type XI, alpha 1
Probe: Col11a1 probe1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: notochord Strong 1A Significant expression in notochord.

Specimen 1C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: sclerotome Strong 1C Significant expression in sclerotome.

Specimen 1E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: notochord Strong 1E Prominent expression in notochord.
TS20: sclerotome Strong Regionally restricted 1E Prominent expression in sclerotome-derived condentsations along vertebral axis.

Specimen 2A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: nasal mesenchyme Present Regionally restricted 2A Expression in mesenchymal condensation forming nasal capsule.
TS20: nasal septum Present 2A

Specimen 2B: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: limb Strong 2B High level of expression detectable at 13.0 dpc.

Specimen 3A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: Meckel's cartilage Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: chondrocranium Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: hyoid Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: limb cartilage condensation Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: rib Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: sternum Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: trachea cartilaginous ring Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: vertebral cartilage condensation Strong 3A Prominent expression in all cartilaginous tissues; such as chondrocranium, primordial cartilage of vertebral bodies, sternum, ribs, tracheal rings, hyoid cartilage, Meckel's cartilage, and limb cartilage.
TS23: humerus Strong 3A
TS23: radius Strong 3A
TS23: ulna Strong 3A

Specimen 4B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: radius Present Regionally restricted 4B
TS23: long bone epiphyseal plate proliferative zone Strong Regionally restricted 4B Strong expression in resting and proliferating chondrocytes.
TS23: long bone epiphyseal plate resting zone Strong Regionally restricted 4B Strong expression in resting and proliferating chondrocytes.
TS23: perichondrium Present Regionally restricted 4B Expression in perichondrium around hypertrophic zone.
TS23: long bone epiphyseal plate hypertrophic zone Absent 4B No expression in cells of hypertrophic zone.
TS23: periosteum Present Regionally restricted 4B Expression in immature periosteum around primary ossification center.
TS23: long bone epiphyseal plate ossification zone Absent 4B Expression absent from primary ossification center.

Specimen 5A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: chondrocranium Strong Regionally restricted 5A High level of expression in mesenchymal cell layers differentiating into osteoblasts.

Specimen 6A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cornea stroma Present 6A Expression in mesothelial layer of cornea.
TS23: perioptic mesenchyme Present Regionally restricted 6A Expression in condensation of perioptic mesenchyme in sclera.

Specimen 6C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: forelimb tendon primordium Present 6C


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory