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Rab6a Gene Detail
Summary
  • Symbol
    Rab6a
  • Name
    RAB6A, member RAS oncogene family
  • Synonyms
    2610028L11Rik, Rab6
  • Feature Type
    protein coding gene
  • IDs
    MGI:894313
    NCBI Gene: 19346
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:100256778-100290475 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 54.36 cM, cytoband C4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    633 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_894313
 protein coding gene Chr7:100256617-100290475 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032574
 protein coding gene Chr7:103499031-103537372 (+)
A/J MGP_AJ_G0032548
 protein coding gene Chr7:100889263-100926082 (+)
AKR/J MGP_AKRJ_G0032484
 protein coding gene Chr7:103291792-103329047 (+)
BALB/cJ MGP_BALBcJ_G0032559
 protein coding gene Chr7:100575350-100608931 (+)
C3H/HeJ MGP_C3HHeJ_G0032274
 protein coding gene Chr7:103673942-103708537 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033057
 protein coding gene Chr7:107424672-107463550 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030051
 protein coding gene Chr7:103289104-103323011 (+)
CAST/EiJ MGP_CASTEiJ_G0031601
 protein coding gene Chr7:95228820-95273210 (+)
CBA/J MGP_CBAJ_G0032241
 protein coding gene Chr7:111127232-111162355 (+)
DBA/2J MGP_DBA2J_G0032392
 protein coding gene Chr7:99226917-99260456 (+)
FVB/NJ MGP_FVBNJ_G0032349
 protein coding gene Chr7:99005613-99039792 (+)
LP/J MGP_LPJ_G0032482
 protein coding gene Chr7:104847842-104884902 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032382
 protein coding gene Chr7:112534864-112572563 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033079
 protein coding gene Chr7:102558711-102594296 (+)
PWK/PhJ MGP_PWKPhJ_G0031319
 protein coding gene Chr7:92345166-92379685 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031162
 protein coding gene Chr7:89873477-89908268 (+)
WSB/EiJ MGP_WSBEiJ_G0031718
 protein coding gene Chr7:103261056-103298522 (+)



Homology
more
  • Human Ortholog
    RAB6A, RAB6A, member RAS oncogene family
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB6A, RAB6A, member RAS oncogene family
  • Synonyms
    RAB6
  • Links
    NCBI Gene ID: 5870
    neXtProt AC: NX_P20340
    UniProt: P20340

  • Chr Location
    11q13.4; chr11:73675638-73761137 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 2 genetic backgrounds
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele die aroound E6 with disorganized epiblast.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    51
  • GO References
    13
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    843
  • Tissues
    39
  • cDNA Data
    231
  • Literature Summary
    9
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 19346 NCBI Gene Model | MGI Sequence Detail 33698 C57BL/6J ±  kb
    transcript NM_001163663 RefSeq | MGI Sequence Detail 3046 C57BL/6  
    polypeptide P35279 UniProt | EBI | MGI Sequence Detail 208 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 232
      cDNA 232

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1925564, MGI:2141829
    References
    more
    • Summaries
      All 73
      Developmental Gene Expression 9
      Gene Ontology 13
      Phenotypes 24
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:354356 Zhang Y, et al., Rab6-Mediated Polarized Transport of Synaptic Vesicle Precursors Is Essential for the Establishment of Neuronal Polarity and Brain Formation. J Neurosci. 2024 Jul 3;44(27)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory