early conceptus |
embryo ectoderm |
embryo endoderm |
embryo mesoderm |
embryo mesenchyme |
extraembryonic component |
alimentary system |
auditory system |
branchial arches |
cardiovascular system |
connective tissue |
endocrine system |
exocrine system |
hemolymphoid system |
integumental system |
limbs |
liver and biliary system |
musculoskeletal system |
nervous system |
olfactory system |
reproductive system |
respiratory system |
urinary system |
visual system |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Transcription Start Site | Location | Distance from Gene 5'-end |
| Tssr15018 | Chr1:171062267-171062298 (-) | -365 bp |
| Tssr15017 | Chr1:171062211-171062219 (-) | -297 bp |
| Tssr15016 | Chr1:171062176-171062189 (-) | -265 bp |
| Tssr15015 | Chr1:171062054-171062070 (-) | -144 bp |
| Tssr15014 | Chr1:171061902-171061913 (-) | 10 bp |
| Tssr15013 | Chr1:171061859-171061893 (-) | 42 bp |
| Tssr15012 | Chr1:171061845-171061856 (-) | 67 bp |
| Tssr15011 | Chr1:171059498-171059519 (-) | 2,409 bp |
| Tssr15010 | Chr1:171058814-171058833 (-) | 3,094 bp |
| Tssr15009 | Chr1:171058792-171058802 (-) | 3,121 bp |
| Tssr15008 | Chr1:171058768-171058788 (-) | 3,140 bp |
| Tssr15007 | Chr1:171058584-171058625 (-) | 3,313 bp |
| Tssr15006 | Chr1:171057503-171057515 (-) | 4,409 bp |
| Tssr15005 | Chr1:171057484-171057499 (-) | 4,426 bp |
| Tssr15004 | Chr1:171057444-171057462 (-) | 4,465 bp |
| Tssr15003 | Chr1:171057432-171057443 (-) | 4,480 bp |
| Tssr15002 | Chr1:171057403-171057420 (-) | 4,506 bp |
| Tssr15001 | Chr1:171057386-171057401 (-) | 4,524 bp |
| Tssr15000 | Chr1:171057366-171057376 (-) | 4,547 bp |
| Tssr288 | Chr1:171057317-171057331 (-) | 4,594 bp |
| Tssr14999 | Chr1:171057304-171057315 (-) | 4,608 bp |
| Tssr14998 | Chr1:171057279-171057296 (-) | 4,630 bp |
| Tssr287 | Chr1:171057256-171057257 (-) | 4,661 bp |
| Tssr14997 | Chr1:171057245-171057254 (-) | 4,668 bp |
| Tssr14996 | Chr1:171057170-171057182 (-) | 4,742 bp |
| QTL | Genetic Location* | Genome Location (GRCm39) | Reference | QTL Note |
| Lmr20 | Chr1, syntenic | Chr1:175468817-175468938 | J:152405 | Potential candidated genes mapping near Lmr20, Lmr20a, Lmr20b and Lmr20c which mapped to D1Mit403 at 100.0 cM of CcS11/Dem in this study are: Fcer1a, Fc receptor, IgE, high affinity I, alpha polypeptide at 94.2 cM; Fcer1g, Fc receptor, IgE, high affinity I, gamma polypeptide at 93.3 cM; Fcgr2b, Fc receptor, IgG, low affinity IIb at 92.3 cM; Cluster of IFN activated genes: Ifi201,Ifi202a; Ifi203, and Ifi204 between 95.2-95.3 cM; and Tgfb2, transforming growth factor, beta 2 at 101.5 cM. [Table 9.] Possibly related QTL controlling other infections and co-localizing with the Lmr20 QTL are: Tir3c, trypanosome infection response 3c at 93.0 cM; Ssta2, susceptibility to Salmonella typhimurium antigens 2 at 95.8 cM; Bbaa12, B.burgdorferi-associated arthritis 12 at 96.0 cM; and, Berr1, berghei resistance locus 1 at 102.0 cM; [Table 10]. |
| Lmr20a | Chr1, syntenic | Chr1:175468817-175468938 | J:152405 | Potential candidated genes mapping near Lmr20, Lmr20a, Lmr20b and Lmr20c which mapped to D1Mit403 at 100.0 cM of CcS11/Dem in this study are: Fcer1a, Fc receptor, IgE, high affinity I, alpha polypeptide at 94.2 cM; Fcer1g, Fc receptor, IgE, high affinity I, gamma polypeptide at 93.3 cM; Fcgr2b, Fc receptor, IgG, low affinity IIb at 92.3 cM; Cluster of IFN activated genes: Ifi201,Ifi202a; Ifi203, and Ifi204 between 95.2-95.3 cM; and Tgfb2, transforming growth factor, beta 2 at 101.5 cM. [Table 9.] Possibly related QTL controlling other infections and co-localizing with the Lmr20 QTL are: Tir3c, trypanosome infection response 3c at 93.0 cM; Ssta2, susceptibility to Salmonella typhimurium antigens 2 at 95.8 cM; Bbaa12, B.burgdorferi-associated arthritis 12 at 96.0 cM; and, Berr1, berghei resistance locus 1 at 102.0 cM; [Table 10]. |
| Lmr20b | Chr1, syntenic | Chr1:175468817-175468938 | J:152405 | Potential candidated genes mapping near Lmr20, Lmr20a, Lmr20b and Lmr20c which mapped to D1Mit403 at 100.0 cM of CcS11/Dem in this study are: Fcer1a, Fc receptor, IgE, high affinity I, alpha polypeptide at 94.2 cM; Fcer1g, Fc receptor, IgE, high affinity I, gamma polypeptide at 93.3 cM; Fcgr2b, Fc receptor, IgG, low affinity IIb at 92.3 cM; Cluster of IFN activated genes: Ifi201,Ifi202a; Ifi203, and Ifi204 between 95.2-95.3 cM; and Tgfb2, transforming growth factor, beta 2 at 101.5 cM. [Table 9.] Possibly related QTL controlling other infections and co-localizing with the Lmr20 QTL are: Tir3c, trypanosome infection response 3c at 93.0 cM; Ssta2, susceptibility to Salmonella typhimurium antigens 2 at 95.8 cM; Bbaa12, B.burgdorferi-associated arthritis 12 at 96.0 cM; and, Berr1, berghei resistance locus 1 at 102.0 cM; [Table 10]. |
| Lmr20c | Chr1, syntenic | Chr1:175468817-175468938 | J:152405 | Potential candidated genes mapping near Lmr20, Lmr20a, Lmr20b and Lmr20c which mapped to D1Mit403 at 100.0 cM of CcS11/Dem in this study are: Fcer1a, Fc receptor, IgE, high affinity I, alpha polypeptide at 94.2 cM; Fcer1g, Fc receptor, IgE, high affinity I, gamma polypeptide at 93.3 cM; Fcgr2b, Fc receptor, IgG, low affinity IIb at 92.3 cM; Cluster of IFN activated genes: Ifi201,Ifi202a; Ifi203, and Ifi204 between 95.2-95.3 cM; and Tgfb2, transforming growth factor, beta 2 at 101.5 cM. [Table 9.] Possibly related QTL controlling other infections and co-localizing with the Lmr20 QTL are: Tir3c, trypanosome infection response 3c at 93.0 cM; Ssta2, susceptibility to Salmonella typhimurium antigens 2 at 95.8 cM; Bbaa12, B.burgdorferi-associated arthritis 12 at 96.0 cM; and, Berr1, berghei resistance locus 1 at 102.0 cM; [Table 10]. |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 11/12/2024 MGI 6.24 |
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