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Itgb6 Gene Detail
Summary
  • Symbol
    Itgb6
  • Name
    integrin beta 6
  • Synonyms
    2210409C20Rik, 4831415H04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:96615
    NCBI Gene: 16420
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:60428636-60552987 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 34.81 cM, cytoband C3
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3369 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96615
 protein coding gene Chr2:60428636-60553005 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025763
 protein coding gene Chr2:60198893-60329044 (-)
A/J MGP_AJ_G0025739
 protein coding gene Chr2:57883841-58012104 (-)
AKR/J MGP_AKRJ_G0025709
 protein coding gene Chr2:59475640-59601073 (-)
BALB/cJ MGP_BALBcJ_G0025734
 protein coding gene Chr2:58007418-58131166 (-)
C3H/HeJ MGP_C3HHeJ_G0025495
 protein coding gene Chr2:59573146-59705392 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026181
 protein coding gene Chr2:61981165-62109700 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023585
 protein coding gene Chr2:55438489-55563034 (-)
CAST/EiJ MGP_CASTEiJ_G0024959
 protein coding gene Chr2:59612846-59741354 (-)
CBA/J MGP_CBAJ_G0025475
 protein coding gene Chr2:64323136-64453002 (-)
DBA/2J MGP_DBA2J_G0025606
 protein coding gene Chr2:57475466-57597901 (-)
FVB/NJ MGP_FVBNJ_G0025568
 protein coding gene Chr2:57019013-57144496 (-)
LP/J MGP_LPJ_G0025694
 protein coding gene Chr2:60044339-60169793 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025599
 protein coding gene Chr2:65943512-66072990 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026238
 protein coding gene Chr2:59503891-59634733 (-)
PWK/PhJ MGP_PWKPhJ_G0024700
 protein coding gene Chr2:57332381-57457885 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024507
 protein coding gene Chr2:59603172-59732635 (-)
WSB/EiJ MGP_WSBEiJ_G0025027
 protein coding gene Chr2:59789385-59918164 (-)



Homology
more
  • Human Ortholog
    ITGB6, integrin subunit beta 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ITGB6, integrin subunit beta 6
  • Synonyms
    AI1H
  • Links
    NCBI Gene ID: 3694
    neXtProt AC: NX_P18564
    UniProt: P18564

  • Chr Location
    2q24.2; chr2:160099667-160271888 (-)  GRCh38
Human Diseases
more
  • Diseases
    2 with Itgb6 mouse models; 1 with human ITGB6 associations

Human Disease Mouse Models
      
IDs
 View 1 model
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotypes from 2 alleles in 6 genetic backgrounds
    4 phenotypes from multigenic genotypes
    3 images
    45 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for a targeted null mutation exhibit baldness associated with macrophage infiltration of skin, exaggerated pulmonary inflammation, and an impaired mucosal mast cell response to nematode infection.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    53
  • GO References
    21
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    860
  • Tissues
    26
  • cDNA Data
    14
  • Literature Summary
    15
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026971 Ensembl Gene Model | MGI Sequence Detail 124352 C57BL/6J ±  kb
    transcript ENSMUST00000059888 Ensembl | MGI Sequence Detail 4806 Not Applicable  
    polypeptide ENSMUSP00000054944 Ensembl | MGI Sequence Detail 787 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 17
      cDNA 14
      Primer pair 3

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-11494, MGI:1917381, MGI:1925805
    References
    more
    • Summaries
      All 94
      Developmental Gene Expression 15
      Diseases 2
      Gene Ontology 21
      Phenotypes 45
    • Earliest
      J:3170 Morse HC 3rd, Genetic nomenclature for loci controlling surface antigens of mouse hemopoietic cells [published erratum appears in J Immunol 1993 Mar 15;150(6):2563]. J Immunol. 1992 Nov 15;149(10):3129-34
    • Latest
      J:352714 Yang J, et al., ZFYVE19 deficiency: a ciliopathy involving failure of cell division, with cell death. J Med Genet. 2024 Jul 19;61(8):750-758
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    12/10/2024
    MGI 6.24     		The Jackson Laboratory