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Lce1m Gene Detail
Summary
  • Symbol
    Lce1m
  • Name
    late cornified envelope 1M
  • Synonyms
    1110059L13Rik, Lce5a, Sprrl10
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913453
    NCBI Gene: 66203
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:92925117-92926367 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.14 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    119 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913453
 protein coding gene Chr3:92925114-92926368 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027529
 protein coding gene Chr3:93495388-93496614 (-)
A/J MGP_AJ_G0027493
 protein coding gene Chr3:90577342-90578568 (-)
AKR/J MGP_AKRJ_G0027461
 protein coding gene Chr3:92677416-92678666 (-)
BALB/cJ MGP_BALBcJ_G0027502
 protein coding gene Chr3:90361171-90362484 (-)
C3H/HeJ MGP_C3HHeJ_G0027241
 protein coding gene Chr3:92891928-92893154 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027945
 protein coding gene Chr3:97055154-97056404 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025294
 protein coding gene Chr3:87182437-87183771 (-)
CAST/EiJ MGP_CASTEiJ_G0026689
 protein coding gene Chr3:92323263-92324459 (-)
CBA/J MGP_CBAJ_G0027216
 protein coding gene Chr3:100392904-100394130 (-)
DBA/2J MGP_DBA2J_G0027354
 protein coding gene Chr3:89896391-89897641 (-)
FVB/NJ MGP_FVBNJ_G0027323
 protein coding gene Chr3:88033736-88035049 (-)
LP/J MGP_LPJ_G0027463
 protein coding gene Chr3:94728677-94729903 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027347
 protein coding gene Chr3:106680859-106682172 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028004
 protein coding gene Chr3:92419622-92420884 (-)
PWK/PhJ MGP_PWKPhJ_G0026417
 protein coding gene Chr3:89768234-89769486 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026237
 protein coding gene Chr3:90760848-90762098 (-)
WSB/EiJ MGP_WSBEiJ_G0026771
 protein coding gene Chr3:92793505-92794767 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    16
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027912 Ensembl Gene Model | MGI Sequence Detail 1251 C57BL/6J ±  kb
    transcript ENSMUST00000029520 Ensembl | MGI Sequence Detail 874 Not Applicable  
    polypeptide ENSMUSP00000029520 Ensembl | MGI Sequence Detail 182 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR028205 Late cornified envelope protein
    Molecular
    Reagents
    less
    • All nucleic 18
      cDNA 17
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2139631
    References
    more
    • Summaries
      All 37
      Developmental Gene Expression 2
      Diseases 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/29/2024
    MGI 6.24     		The Jackson Laboratory