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Cfap90 Gene Detail
Summary
  • Symbol
    Cfap90
  • Name
    cilia and flagella associated protein 90
  • Synonyms
    1700001L19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916565
    NCBI Gene: 69315
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:68745558-68762350 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 35.55 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    466 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916565
 protein coding gene Chr13:68745540-68762350 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020729
 protein coding gene Chr13:68813623-68830328 (+)
A/J MGP_AJ_G0020685
 protein coding gene Chr13:66390387-66407121 (+)
AKR/J MGP_AKRJ_G0020660
 protein coding gene Chr13:68554254-68570896 (+)
BALB/cJ MGP_BALBcJ_G0020682
 protein coding gene Chr13:66932601-66949248 (+)
C3H/HeJ MGP_C3HHeJ_G0020477
 protein coding gene Chr13:68247730-68264336 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021119
 protein coding gene Chr13:71212792-71229489 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018687
 protein coding gene Chr13:63356249-63373278 (+)
CAST/EiJ MGP_CASTEiJ_G0019994
 protein coding gene Chr13:67211985-67228622 (+)
CBA/J MGP_CBAJ_G0020435
 protein coding gene Chr13:73938421-73955064 (+)
DBA/2J MGP_DBA2J_G0020561
 protein coding gene Chr13:66284653-66301313 (+)
FVB/NJ MGP_FVBNJ_G0020541
 protein coding gene Chr13:65296359-65312998 (+)
LP/J MGP_LPJ_G0020633
 protein coding gene Chr13:69112467-69129032 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020569
 protein coding gene Chr13:72424228-72440878 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021158
 protein coding gene Chr13:67840349-67857051 (+)
PWK/PhJ MGP_PWKPhJ_G0019748
 protein coding gene Chr13:64967350-64984263 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019571
 protein coding gene Chr13:64330786-64347564 (+)
WSB/EiJ MGP_WSBEiJ_G0020051
 protein coding gene Chr13:68311085-68327648 (+)



Homology
more
  • Human Ortholog
    CFAP90, cilia and flagella associated protein 90
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP90, cilia and flagella associated protein 90
  • Synonyms
    C5orf49
  • Links
    NCBI Gene ID: 134121
    neXtProt AC: NX_A4QMS7
    UniProt: A4QMS7

  • Chr Location
    5p15.31; chr5:7830378-7851151 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Male mice for a null allele exhibit normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    780
  • Tissues
    9
  • cDNA Data
    20
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69315 NCBI Gene Model | MGI Sequence Detail 16793 C57BL/6J ±  kb
    transcript NM_027035 RefSeq | MGI Sequence Detail 1808 C57BL/6  
    polypeptide Q9DAR0 UniProt | EBI | MGI Sequence Detail 182 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:7384807
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 7
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:348435 Suzuki A, et al., Individual disruption of 12 testis-enriched genes via the CRISPR/Cas9 system does not affect the fertility of male mice. J Reprod Immunol. 2024;:104252
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/24/2024
    MGI 6.24     		The Jackson Laboratory